PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024343.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24198.2 Da    PI: 7.965
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024343.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF369e-121563149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien+    v+fskRr g+ KKA  +  L + ev ++ifs++gk + y
  PCP024343.1 15 KKIENEEVLLVSFSKRRSGVYKKATDMIALSGGEVGIVIFSPSGKPFSY 63
                 689*****************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MEGKQTRGRQ KIEMKKIENE EVLLVSFSKR RSGVYKKATD MIALSGGEVG IVIFSPSGKP  60
FSYGHPSVDY VINRFMNQNP PENDDYTHQF MEAHRQMKIS EAMEQYNELL DPLEAVKERQ  120
KSLLRKNRTR RNQEHLWWSV PIEELRVDEL KQIHESMAEL HMTISKHLKE RSSSSNIFGA  180
SSSGSVQQTN PNFDADPSGT GSYAFPYGYG H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-36M-type_MADS family protein