PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024302.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 532aa    MW: 60281 Da    PI: 4.4851
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024302.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS131.68.6e-411625292374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL ++ ea++ g+ el + ++  l e ++p g++++R+a+ + ++     +r      + l+  ++   + ++  aa++lf++++P+ +f+h +aN
  PCP024302.1 162 HHLLKAFGEAMEMGQRELGKVIMRCLAEKVNPLGQSLERIAFNLCQGVVDNHHR------DYLK--QE---SCQNFEAAFNLFYQIFPFGRFAHYAAN 248
                  58889999***************************************9999888......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   aIl+a+ ++ e+vH++ +di++G+Q   L++a a+R++    l++T+++    +       + + eet+++L++ A+++g++++ + +   ++edl 
  PCP024302.1 249 TAILKAIPEDvETVHVVELDIGEGVQLSQLIEAVAKRNKT---LKVTAIKWDVVErdevapPQWRFEETKRQLQHHARSFGLNLKVEEI---TIEDL- 339
                  *******9998**************************765...999999875444667789999***********************99...55555. PP

         GRAS 191 leeL.rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe...adh.nsesFlerflealeyysalfdsleakl 275
                  ++e+ +v++    +E +a n ++ l ++ +    ++    e+L+l k+l ++    +v++ + +   + + n++sF   f   + +y +l++sle+++
  PCP024302.1 340 VSEIkKVNKrggrREFIAFNTMVGLPHMTR--RRSRGLVMEFLRLAKDLLANsargIVTFGDGDacvL-RgNDSSFSSFFDANVVHYKTLLESLESTF 434
                  3333123324466**************983..33444568*********87655669*******6433.26*************************** PP

         GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvS 371
                  p++  e+r+++E  ++++ +++     + +   + ++l++W      +G++  ++s ++ ++ak ++   +s g r+  e+ +++ l W++ pLv+v 
  PCP024302.1 435 PSHLgEARMVMELLFVAPYVSSQAWLDKWNEAREGRNLQSW------FGLEGRRVSGEMLMEAKEMVGADSSYGVRIGgENANEMALEWNGIPLVTVE 526
                  *9998999999999999999998888888866666667777......8*****************************978899999***********9 PP

         GRAS 372 aWr 374
                   W+
  PCP024302.1 527 TWT 529
                  995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MMQSEMFQTL WPYLNVTNSP LDTNEYTDQM GSSEFSSIFM ASDEFSETSF PFSTMFSGEF  60
EQVADCDHLL QVISTEVEEF PMELGGFEPN YLIGEIENMY ASCLESSEGS TLPSQQFFEG  120
NDVWSPNSFV TSETSFMDVT SVQQSITLPR DDMEIDNKVS IHHLLKAFGE AMEMGQRELG  180
KVIMRCLAEK VNPLGQSLER IAFNLCQGVV DNHHRDYLKQ ESCQNFEAAF NLFYQIFPFG  240
RFAHYAANTA ILKAIPEDVE TVHVVELDIG EGVQLSQLIE AVAKRNKTLK VTAIKWDVVE  300
RDEVAPPQWR FEETKRQLQH HARSFGLNLK VEEITIEDLV SEIKKVNKRG GRREFIAFNT  360
MVGLPHMTRR RSRGLVMEFL RLAKDLLANS ARGIVTFGDG DACVLRGNDS SFSSFFDANV  420
VHYKTLLESL ESTFPSHLGE ARMVMELLFV APYVSSQAWL DKWNEAREGR NLQSWFGLEG  480
RRVSGEMLME AKEMVGADSS YGVRIGGENA NEMALEWNGI PLVTVETWTN QS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-18GRAS family protein