PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP024301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 531aa MW: 60204.8 Da PI: 4.4169 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 121.7 | 9.2e-38 | 161 | 528 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL ++ e ++ g+ el ++ l e ++p g++++Rla+ + ++ ++ + l+ ++ + ++ aa++lf++++P+ +++h +aN PCP024301.1 161 HHLLKAFSESMEMGQRELELVIMRCLAEKVNPLGQSLERLAFNLCQGFVDNQHG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRLAHYAAN 247 57788888999999999999999************************9988888......2222..22...356777899****************** PP GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aIlea+ ++ e+vH++ fdi++G+Q L++a a+R+++ l++T+++ ++ + + eet+++L++ +++g++++ + + ++edl PCP024301.1 248 TAILEAIPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKK---LKVTAIKWDVEEsdevapPQWRFEETKKQLQHHGRSFGLNLKVEEI---AIEDL- 338 *******9998**************************876...******976555668899999***********************99...44455. PP GRAS 191 leeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276 ++e++ + +E la n+++ l ++ + ++ e+L+l k+l ++ +v++ + +++ n++sF f + +y al++sle+++p PCP024301.1 339 VSEIKKANkrggmREFLAFNSMVGLPHMR--RRRSRGLVMEFLRLAKDLLANsargIVTFGDGYacTKRgNDSSFRSFFDANVVHYKALLESLESTFP 434 4444333334566*************997..333444568*********7755556899999775334489*************************** PP GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372 ++ e+r+++E +++++ +++ + + +er+ + +G+++ ++s ++ ++ak ++ +s g rv e+ +++ l W++ pLv v PCP024301.1 435 SHLgEARMVMELMFVAPYVSSQAWLDKWN-EERE-----CGNLQPLFGLESRRVSREMLMEAKDIVGADSSYGVRVGgENGNEMALEWNSIPLVRVET 526 999899*******9999999988888877.3333.....34556789*****************************966677888***********99 PP GRAS 373 Wr 374 W+ PCP024301.1 527 WT 528 95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence |
MNFQSLWPYL NVTNSLVDTN EYNDQMVSTE FSSIFMASDE FSESSPFPFS TIFSVECEQF 60 ADCDNLLQVT SMAAEEFPMD LGGFEPNFFI DQYENMYASC LEGSEGSNTL PSQQFSVEGN 120 DVWSPNSFVT SEASSMDVTS VQQSLTLPRD DMEIDNEVSI HHLLKAFSES MEMGQRELEL 180 VIMRCLAEKV NPLGQSLERL AFNLCQGFVD NQHGDYLKQE SCKNFEAAFN LFYQIFPFGR 240 LAHYAANTAI LEAIPEDVET VHVVEFDIGE GVQLSQLIEA VAKRNKKLKV TAIKWDVEES 300 DEVAPPQWRF EETKKQLQHH GRSFGLNLKV EEIAIEDLVS EIKKANKRGG MREFLAFNSM 360 VGLPHMRRRR SRGLVMEFLR LAKDLLANSA RGIVTFGDGY ACTKRGNDSS FRSFFDANVV 420 HYKALLESLE STFPSHLGEA RMVMELMFVA PYVSSQAWLD KWNEERECGN LQPLFGLESR 480 RVSREMLMEA KDIVGADSSY GVRVGGENGN EMALEWNSIP LVRVETWTNR S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-17 | GRAS family protein |