PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP023855.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 439aa    MW: 48514.3 Da    PI: 5.3326
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP023855.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53e-121153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 i n+  r+ +f kR + + KK +EL +LCd+   +i+++++g+
  PCP023855.1 11 IVNDNARKSSFRKRNACLVKKMSELTTLCDISTFIIVYGEDGE 53
                 679999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MTRNKVKLAW IVNDNARKSS FRKRNACLVK KMSELTTLCD ISTFIIVYGE DGEEPTVWPD  60
RTVVEQLIAR FQSIPDLERW KKMMSQETYL KDRAAKMQEQ IRKIMKKNNE LNTNNVLHQI  120
IEKGKPLFEF DDNDLTGVVF SLEERMKEIQ KRIDYFEQEN PNHPPSTPSQ GGGDQSEMIT  180
QIGSDFPESL FMYKDLGKQI QNNYGPTISV RSDIVIPPSS LFGNFTIAND MGMPFWNLGG  240
NCDGSDLGLP KKIRSVEGPR SGVGDNMGVH SGFFKYQNYV GSDNKYGNYK ESRPFCDWGV  300
GGDGSDKRLT LMNSEGMNGG TGMEQEVFPS YAIKAAGITS NVGSDLGLGM TSYNDDTGFR  360
IGDDKAGSNN GVFGHLPHQF NIGVRTESHM DLPSASFGGN GAGSDVGLLQ GLFAGSNAGS  420
DVGHPYDVSK SWQFPFSSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-29M-type_MADS family protein