PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023846.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 356aa MW: 39753.9 Da PI: 6.5751

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023846.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.2e-09	18	61	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +++ ++G+ +W++++++ g +R++k+ ++rw ++ PCP023846.1 18 WTAEEDAKILAHESKHGTSNWTSVPKKPGITRCGKSSRLRWPNH 61 ***************************99********776 PP
2	Myb_DNA-binding	45	2.5e-14	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W +Ia+ ++ gRt++++k++w++ PCP023846.1 70 SFTPHEEELIVRLHATIGSR-WPAIAQQLP-GRTDNDVKNYWNT 111 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MVRPACCDKL HVKRDTLWTA EEDAKILAHE SKHGTSNWTS VPKKPGITRC GKSSRLRWPN 60 HFKPNLKHES FTPHEEELIV RLHATIGSRW PAIAQQLPGR TDNDVKNYWN TKLKKKLSEM 120 GIDPVTHKPF SQVLADYGNI GGVSKVGMRI GIGSLNKDLK NAMLMKPAEP YLSPAQGFSN 180 INSHLMPITM IPTKAEPILD SFLGHNQPSS QPPDLLTQLQ AIKLVTEASK SMEFQSSAPN 240 FYSHEGTLSS RSSTSSSAAQ EHATLQAFSW SDFLLEDAFM PIGDTQEHKN KAEYSSKNIA 300 QVAVQQSQID MDYAISSNEV EATSPACDSS FVEAMVSREN EMFLEFPELL EEPFYY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MVRPACCDKL HVKRDTLWTA EEDAKILAHE SKHGTSNWTS VPKKPGITRC GKSSRLRWPN  60
HFKPNLKHES FTPHEEELIV RLHATIGSRW PAIAQQLPGR TDNDVKNYWN TKLKKKLSEM  120
GIDPVTHKPF SQVLADYGNI GGVSKVGMRI GIGSLNKDLK NAMLMKPAEP YLSPAQGFSN  180
INSHLMPITM IPTKAEPILD SFLGHNQPSS QPPDLLTQLQ AIKLVTEASK SMEFQSSAPN  240
FYSHEGTLSS RSSTSSSAAQ EHATLQAFSW SDFLLEDAFM PIGDTQEHKN KAEYSSKNIA  300
QVAVQQSQID MDYAISSNEV EATSPACDSS FVEAMVSREN EMFLEFPELL EEPFYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	6e-61	MYB family protein