PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023634.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 444aa MW: 47914.6 Da PI: 9.6371

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023634.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	211	233	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg++F+ ++ + H + H PCP023634.1 211 TCHKCGERFTKWDAAEAHHLSkH 233 7*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MPTVWFSLKK SLHCKSEPSD VHDPRGRKQL NTISTRKAGG GRSGCSRSIA NLKDVIHGSK 60 RHMERPPSNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TSLGGFQDGV GGGNANNGSG 120 GGSVGGGSTF VDTLKPGTPG PGGHPTMHYF NPSFRPSSTP PRKSHFLASA ESTEGSAGFK 180 GSAVSGSAGG IRQSNRISFD TENSNGSSAI TCHKCGERFT KWDAAEAHHL SKHAVTELVE 240 GDSSRKIVEI ICRTSWLKSE NHCGRIERVL KVHNMQRTLA RFEEYREMVK TKASKLPKKH 300 PRCIADGNEL LRFYGTTVAC CLGLNGSSSL CALDKCSVCR IIRNGFSAKK ELKEGVGVFT 360 TSTSGRAFEA IQIVEEDATL RKALIVCRVI AGRVHKPLEN IQEIAGQTGF DSLAGKMGLY 420 SNIEELYLLN PRALLPCFLV ICKP

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MPTVWFSLKK SLHCKSEPSD VHDPRGRKQL NTISTRKAGG GRSGCSRSIA NLKDVIHGSK  60
RHMERPPSNC SPRSIGSSEF LNPITHEVIL SNSRCELKIT TSLGGFQDGV GGGNANNGSG  120
GGSVGGGSTF VDTLKPGTPG PGGHPTMHYF NPSFRPSSTP PRKSHFLASA ESTEGSAGFK  180
GSAVSGSAGG IRQSNRISFD TENSNGSSAI TCHKCGERFT KWDAAEAHHL SKHAVTELVE  240
GDSSRKIVEI ICRTSWLKSE NHCGRIERVL KVHNMQRTLA RFEEYREMVK TKASKLPKKH  300
PRCIADGNEL LRFYGTTVAC CLGLNGSSSL CALDKCSVCR IIRNGFSAKK ELKEGVGVFT  360
TSTSGRAFEA IQIVEEDATL RKALIVCRVI AGRVHKPLEN IQEIAGQTGF DSLAGKMGLY  420
SNIEELYLLN PRALLPCFLV ICKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-133	C2H2 family protein