PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP023202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 25645.3 Da PI: 9.2776 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.3e-18 | 29 | 74 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G+++W++I+r++ gR++k+c++rw + PCP023202.1 29 KGPWSAEEDRVLTQLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 74 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.9e-17 | 83 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ PCP023202.1 83 PFSQAEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 125 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence |
MCSSSTSSSG ASSSESSLPR NPNKPERIKG PWSAEEDRVL TQLVDRYGPR NWSLISRYIK 60 GRSGKSCRLR WCNQLSPSVQ HRPFSQAEDE TILAAHARFG NRWATIARLL PGRTDNAVKN 120 HWNSTLKRRV MGDQLTEGGS FGGGGGGGNV GSNEGMSTSS VSGSLANGSM EFDPLTELTL 180 APPGIGSGSG GAKVGEQQRN NESGPSGFWD SMRDVIAREV RDYVATTFSE PSELHRLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-57 | MYB family protein |