PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023090.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 328aa MW: 36806 Da PI: 6.9519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023090.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.8e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ +G g+W++++++ g+ R++k+c++rw +yl PCP023090.1 13 RGLWSPEEDEKLRKHITTHGHGSWSSVPKHAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	56.2	8e-18	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ PCP023090.1 66 RGSFTPEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MGHRCCGKQK VKRGLWSPEE DEKLRKHITT HGHGSWSSVP KHAGLQRCGK SCRLRWINYL 60 RPELRRGSFT PEEEQTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPKTHNLLPN SHHQRSASNN AASSSQSPLL QSHNQQQPVS VPLTEINAST INVTLSTDQY 180 HDHGQNPSNA SWTRVDDPTF NDITRLPHQQ STDHSTLINN ISSSSPSSSV NLSVFGLLEN 240 SNIWASGAEP FEAPSLLVGE QSKGEEVVLQ QEKNTLLDQM EIKGIEDMDH ASIFESSSVD 300 FSFVESTLMS CGEISQDLNS MCNFAWRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	6e-85	MYB family protein