PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP023022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 16204 Da PI: 9.2121 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e PCP023022.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSHGKLFEL 57 79********************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS HGKLFELATK 60 GSLALSIYFC IIILSMQGLI ERYMKMKPTR VSHAEQTVET ETLVCLKENT HTYLEDVEYC 120 TTYKTNIIGI LIHKASAASG AGYE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-38 | MIKC_MADS family protein |