PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022936.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 25990.9 Da    PI: 7.4407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022936.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.1e-231962851
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rqvtfskR  gilKKAe LS+LC+aevaviifs+tgkl++yss
  PCP022936.1 19 ARQVTFSKRSRGILKKAEQLSILCEAEVAVIIFSQTGKLFDYSS 62
                 79****************************************96 PP
2K-box39.52.4e-14881731398
        K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + +  +++  +L ke+e   r++R+++GedL++L+l +L++Le+ +e s+ ++ ++K++ ++++i    +k  el e+n++L++++
  PCP022936.1  88 QLQLEKENTIRLSKELEDKTRKLRQMKGEDLQDLDLDQLNKLEKLVEASIGRVIKTKEKKIMSEIMAHANKGAELIEANNQLKQRM 173
                  45666777889999999999**************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVERMKEKIK IRRIDYLPAR QVTFSKRSRG ILKKAEQLSI LCEAEVAVII FSQTGKLFDY  60
SSSSTKDVIA RYKSHTGGEK WDQITLHQLQ LEKENTIRLS KELEDKTRKL RQMKGEDLQD  120
LDLDQLNKLE KLVEASIGRV IKTKEKKIMS EIMAHANKGA ELIEANNQLK QRMVMLSAGG  180
DIGPAGIMEL DNLNNVGEEG VTSESATNVT TCSSSAFSLE DDCSDILSLK LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-48MIKC_MADS family protein