PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022848.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 423aa MW: 46287.4 Da PI: 8.1838

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022848.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	33	78	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v +G ++W++Iar ++ gR++k+c++rw + PCP022848.1 33 RGPWSPEEDAVLSRLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 78 89****************************.*********985 PP
2	Myb_DNA-binding	44.8	2.8e-14	152	191	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ PCP022848.1 152 EEEDRIIVTAHAIHGNK-WAVIAKLLP-GRTDNGIKNHWNST 191 7**************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MTAPNDAVPK EANDRPGTEA ELNVGAVPGG KVRGPWSPEE DAVLSRLVGN FGARNWSLIA 60 RGIPGRSGKS CRLRWCNQLD PCVKRKPFSG GSSILLVPRD HWLIKVNVLG LTSVHVVWNC 120 IKILYHAGSL VAKMLPLVQY LSFLKGTLIN AEEEDRIIVT AHAIHGNKWA VIAKLLPGRT 180 DNGIKNHWNS TLRRKCFDKG RFNTGHGEMM EDDTFDRKNA SSEETLSVGN ISSFKTHEGR 240 EVLMENRPNQ FDVRSHAKEG SGAADSKHNS TLIAEPSDHP TLQSTISRPV ARVSAFSVYN 300 RPSGPANASS FSRTVPSHGP LVPITKLDFG FDNFLEGACN EPMVPQRCGH GCCDRVEGHS 360 QSSLLGPEFV EYDEPLPFSS HELISIATDL NKIAWIKSGL ESNGIRMPEN VASQRVFQAA 420 ATT

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MTAPNDAVPK EANDRPGTEA ELNVGAVPGG KVRGPWSPEE DAVLSRLVGN FGARNWSLIA  60
RGIPGRSGKS CRLRWCNQLD PCVKRKPFSG GSSILLVPRD HWLIKVNVLG LTSVHVVWNC  120
IKILYHAGSL VAKMLPLVQY LSFLKGTLIN AEEEDRIIVT AHAIHGNKWA VIAKLLPGRT  180
DNGIKNHWNS TLRRKCFDKG RFNTGHGEMM EDDTFDRKNA SSEETLSVGN ISSFKTHEGR  240
EVLMENRPNQ FDVRSHAKEG SGAADSKHNS TLIAEPSDHP TLQSTISRPV ARVSAFSVYN  300
RPSGPANASS FSRTVPSHGP LVPITKLDFG FDNFLEGACN EPMVPQRCGH GCCDRVEGHS  360
QSSLLGPEFV EYDEPLPFSS HELISIATDL NKIAWIKSGL ESNGIRMPEN VASQRVFQAA  420
ATT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-64	MYB family protein