PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP022823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 158aa MW: 18924.2 Da PI: 10.3862 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.6 | 5.9e-12 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+s r+vtf k + g +KK +E+ LCd + +i+s++ PCP022823.1 10 FIMNDSSRKVTFRKKKRGFMKKMFEINKLCDFLTCAVIYSPD 51 799*************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MTRRKVNLAF IMNDSSRKVT FRKKKRGFMK KMFEINKLCD FLTCAVIYSP DEPQPDVWPN 60 PSEARRLIEQ FENMPEEERN KKMVTHEMFL KQMVEKEQEK VNKQKKENRE VEIWLAMNQC 120 LTGKPLNGLA FTDIQEIGWM IDGRLKEVVA IQRRRKRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKVNLAFIMNDSSRKVTFRKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-27 | M-type_MADS family protein |