PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP022822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19686.1 Da PI: 10.0756 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.9 | 7e-15 | 12 | 51 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r++++ kR+ng +KK +E+ +LCd+ v+ ii+s+ PCP022822.1 12 IMNDASRKTSYNKRKNGFIKKMHEINILCDVPVCGIIYSP 51 8899**********************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MAGRKKVKLA YIMNDASRKT SYNKRKNGFI KKMHEINILC DVPVCGIIYS PYESQPVVWP 60 NLLESQRLIT KFRSMPEAER NKKMVTHEMF LKQRIEKQQE KLNNLKKENR EKQIRMLMNQ 120 CLTGRPLTGL DLNDLNDMEC MIKECVTEIV AQIKSRKEEN LAERNQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-34 | M-type_MADS family protein |