PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022746.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 386aa MW: 43839.6 Da PI: 6.7705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022746.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	244	266	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PCP022746.1 244 YKCETCNKVFKSYQALGGHRASH 266 9************9999998887 PP
2	zf-C2H2	11.3	0.0011	302	324	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H PCP022746.1 302 HECPVCFRVFSSGQALGGHKRSH 324 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEKHGCKICM RSFPNGRALG GHMRSHVRNH PFPPKPEEEE SNREQTQFTM DEVDNSTSAS 60 SSSEDDGEEQ DDDMIYGLRE NPKRSIKLVD PEFSFAAHAG SVVLQDRESE TESSKNPTRR 120 RSKRTRKSSV MELHHHQNHI QYHHHPKLEA LKKIKLKNKV VSSKDSFEPE PVSSISDATR 180 EEDVAFCLMM LSRDKWRKQD HHHQHEQEQE QEQADEAERS MEDTEDSEEH LIKFPRIRTA 240 RRKYKCETCN KVFKSYQALG GHRASHKKIK ASNLSPIYEP ELEQENLNAA GKSSSVAERK 300 IHECPVCFRV FSSGQALGGH KRSHVMTGSA AAAASNSSPP FPWKSLSRLG DSLIDLNLPA 360 PVDDDEISQI ELSAVSDAEF VNHVRS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEKHGCKICM RSFPNGRALG GHMRSHVRNH PFPPKPEEEE SNREQTQFTM DEVDNSTSAS  60
SSSEDDGEEQ DDDMIYGLRE NPKRSIKLVD PEFSFAAHAG SVVLQDRESE TESSKNPTRR  120
RSKRTRKSSV MELHHHQNHI QYHHHPKLEA LKKIKLKNKV VSSKDSFEPE PVSSISDATR  180
EEDVAFCLMM LSRDKWRKQD HHHQHEQEQE QEQADEAERS MEDTEDSEEH LIKFPRIRTA  240
RRKYKCETCN KVFKSYQALG GHRASHKKIK ASNLSPIYEP ELEQENLNAA GKSSSVAERK  300
IHECPVCFRV FSSGQALGGH KRSHVMTGSA AAAASNSSPP FPWKSLSRLG DSLIDLNLPA  360
PVDDDEISQI ELSAVSDAEF VNHVRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	155	RRSKRTRKSSVMELHHHQNHIQYHHHPKLEALKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-54	C2H2 family protein