PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022669.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 700aa    MW: 77831.8 Da    PI: 6.4138
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022669.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-1333356991374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l+  + p gd+mqR+a++fteAL+arla + +++ +  +p++ s+    s e l+++++ ++++P++kf+h+
  PCP022669.1 335 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVMPLGDSMQRVASCFTEALSARLAATLTTTPSGSAPKPFSPFPpnSFEILKIYQIVYQACPYIKFAHF 432
                  68*****************************************************887777766666655433339********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e ++etg+ L+++A +l+vpfef++ v ++ledl+++++
  PCP022669.1 433 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEGVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 525
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  PCP022669.1 526 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 617
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e+ GFk+vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  PCP022669.1 618 EIRNIVACEGAERTERHERLEKWRKVMESKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 699
                  *********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    
MMINTLSGSM GSVKSENSCT SDLKPPSPTE STTMSISISE CKKTTTPPSS ELDQQSSLTP  60
PSLNFPTLKF EVDDVEVQSP DHSIWDSLFS EQFDTDFMVL SPVPNNMPNS PQNGGSATHQ  120
NYNYNYAQSM QGQSLSGCSP PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMQPAD  180
QNMQSLPVSI EDFLDDYQRD GFIAAYPTTT SSRMSGSSSQ SYNHHDHLPA SSTVPSATLD  240
CMPMHNSSRF SRSESEASLV TAGNSQLTQE SSRGSGYQQM GGAPLSQQLQ QERMQEKQQH  300
PLMQPHKHHQ HQQNLHYNMM PPMAHEQEQD GGLQLVHLLL ACAEAVAKED YMLARRYLHH  360
LNRVVMPLGD SMQRVASCFT EALSARLAAT LTTTPSGSAP KPFSPFPPNS FEILKIYQIV  420
YQACPYIKFA HFTANQAIFE AFESEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI  480
TGVGPCIEGV KETGRCLTEL ALSLHVPFEF HAVGEQLEDL KPHMFNRRIG EALAVNTVNR  540
LHRVPVNCLG NLLAMIRDQA PNIVTLVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF  600
PPDSAQRAKV EQYIFAPEIR NIVACEGAER TERHERLEKW RKVMESKGFK SVPLSANAVT  660
QSKILLGLYS CDGYRMTEDK GCLLLGWQDR SIMAASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-95GRAS family protein