PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP022328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 23164.2 Da PI: 10.1708 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.7 | 7.3e-09 | 12 | 50 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 n+s ++ tf k r+g +KK +E+ LCd+ + i++s++ PCP022328.1 12 MNNSSQKATFRKKRKGFMKK-YEINKLCDVLTCAIMYSPN 50 5889999*************.9****************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence |
MTRKKVKLAF MMNNSSQKAT FRKKRKGFMK KYEINKLCDV LTCAIMYSPN KSQPDAWPDH 60 SEVRRLIEQF KNMPEEERNK VMVNHKMFLK QMVEMELEKV NKLEKGNREL EIWMAMNHFI 120 AGKPLNDLQF TDLKEMRRMI EEKLKEFEAN IKSWKEELAK MNQLLGAQPT VAGENIQNVM 180 QMVPWSMWDV PTKSS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFMMNNSSQKATFRKKR |
2 | 17 | 26 | QKATFRKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-31 | M-type_MADS family protein |