PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022190.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 583aa    MW: 65049.2 Da    PI: 6.6162
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022190.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.5e-1312135821373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA a+s++d+   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+ ++y+al+++e +   s e l+++++++e++P+lkf++++a
  PCP022190.1 213 LKQLLIACAGALSNNDMDGFEKLIEKARGAVSISGEPIQRLGAYLVEGLVARKEISGANIYHALRCREPE---SNELLSYMQILFEICPYLKFGYMAA 307
                  689**************************************************99**************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p+s+  + + le++g+rL+ + +++++p+ef+  v     +++ ++L
  PCP022190.1 308 NGAIAEACRNEDRIHIIDFQIAQGSQWVTLLQALAARPGGAPHVRITGIDDPRSKhaRGDGLEAVGRRLKAISDKFNIPIEFHG-VPAFSPNVTRDML 404
                  ****************************************************9998999*************************.6888899****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+ +++rd +L++v+sl+Pkv ++veqe+++n+++F++rf+ealeyy+a+f+s+++ lpr s+eri+vE+++l+r
  PCP022190.1 405 DVRPGEALAVNFPLQLHHTPDESVDENNPRDGLLRTVRSLNPKVTTLVEQESNTNTTPFFNRFVEALEYYMAMFESIDVALPRSSKERINVEQHCLAR 502
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+Lvs+SaW
  PCP022190.1 503 DIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLVERDGAMLLGWKDRNLVSASAW 582
                  *************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MDQHFGFGAT GAGFSYTAPL PTVPSLRKRL LGSLKFDTSN SPNSPFLTHF DSDSLTTLSD  60
SQEERSSSEN LSGVTPSCTS SFETNSYVHQ LRLSPSVDRS RDGLQVYSGS TSALRDANSN  120
QNIKQTLQEL ESALMGPDDE EEAVSTPNTY IGESSRRQMQ RSMSWIQEHQ VSQPVQRQTS  180
FVSRQRQLGE VQIEKRHKVI DDASLKGLPA GNLKQLLIAC AGALSNNDMD GFEKLIEKAR  240
GAVSISGEPI QRLGAYLVEG LVARKEISGA NIYHALRCRE PESNELLSYM QILFEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GSQWVTLLQA LAARPGGAPH VRITGIDDPR  360
SKHARGDGLE AVGRRLKAIS DKFNIPIEFH GVPAFSPNVT RDMLDVRPGE ALAVNFPLQL  420
HHTPDESVDE NNPRDGLLRT VRSLNPKVTT LVEQESNTNT TPFFNRFVEA LEYYMAMFES  480
IDVALPRSSK ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT MAGFRQYPLS  540
SYVNSVIRSL LRCYSEHYTL VERDGAMLLG WKDRNLVSAS AWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-174GRAS family protein