PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022068.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 352aa MW: 40243.5 Da PI: 9.6281

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022068.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.7e-18	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ PCP022068.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899***************************.*********996 PP
2	Myb_DNA-binding	58.8	1.3e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ PCP022068.1 67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEDYGDEAKS TGCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS 120 KVCGKKSFQD FFNDHSPNSS SISNNFDAGR KLRSQGSSIG FGPNNISTKF FEFQNLNKDR 180 AMFMDSRPTS SLPYNWNFAS MPTTSNKSSS SVDLLGRERR EYINNSSSNY TISELSKGSH 240 PQLVHRRHNP TSSFLYGCYR GSSSNAFGRP TYSSPFGCPS NLADHHINRQ DQHGSTFKEV 300 LPNLYENAST LPKWRVAATT TKFDDHDPQD HVSIDHHKET PFIDFLGVGI SS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEDYGDEAKS TGCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS  120
KVCGKKSFQD FFNDHSPNSS SISNNFDAGR KLRSQGSSIG FGPNNISTKF FEFQNLNKDR  180
AMFMDSRPTS SLPYNWNFAS MPTTSNKSSS SVDLLGRERR EYINNSSSNY TISELSKGSH  240
PQLVHRRHNP TSSFLYGCYR GSSSNAFGRP TYSSPFGCPS NLADHHINRQ DQHGSTFKEV  300
LPNLYENAST LPKWRVAATT TKFDDHDPQD HVSIDHHKET PFIDFLGVGI SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-62	MYB family protein