PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022066.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 363aa MW: 41402.1 Da PI: 8.7351

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022066.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.4e-06	85	109	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC sF+rk++L+rH+ H PCP022066.1 85 YVCSvdDCRSSFRRKDHLNRHLLQH 109 99*******************9887 PP
2	zf-C2H2	13.4	0.00023	153	177	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F s L++H ++H PCP022066.1 153 HVCQevGCGKVFLFASKLQKHESSH 177 789999****************997 PP
3	zf-C2H2	14.4	0.00011	245	269	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C +Fs+ksnL +H + H PCP022066.1 245 RCSykGCLHTFSTKSNLIQHVKAvH 269 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MREVFDLNGP VSGGRPPVKL HQASLSHVPF SLRNQHFNEV SIGQREALDP NQELQNARAF 60 DLNGPVTGGR PPVKLHQESL NHRPYVCSVD DCRSSFRRKD HLNRHLLQHQ GKLFKCPIEN 120 CNRGFVCQGN RSRHVKELHS EDGTYVGRGQ KQHVCQEVGC GKVFLFASKL QKHESSHVHM 180 DSVEAFCSEA GCMKYFTNDQ CLKDHILSCH QHVACEICGS KKLKRNIKRH LLTHKGGAPS 240 VERIRCSYKG CLHTFSTKSN LIQHVKAVHL EDKPFACSFS GCGMRFAYKH VRDNHEKTRC 300 HVYAYGDFVE ADEQFQSRPR GGLKRKCPTI EMLLRKRVTP PDQLGLESEY LSWLLLQDAE 360 DEN

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MREVFDLNGP VSGGRPPVKL HQASLSHVPF SLRNQHFNEV SIGQREALDP NQELQNARAF  60
DLNGPVTGGR PPVKLHQESL NHRPYVCSVD DCRSSFRRKD HLNRHLLQHQ GKLFKCPIEN  120
CNRGFVCQGN RSRHVKELHS EDGTYVGRGQ KQHVCQEVGC GKVFLFASKL QKHESSHVHM  180
DSVEAFCSEA GCMKYFTNDQ CLKDHILSCH QHVACEICGS KKLKRNIKRH LLTHKGGAPS  240
VERIRCSYKG CLHTFSTKSN LIQHVKAVHL EDKPFACSFS GCGMRFAYKH VRDNHEKTRC  300
HVYAYGDFVE ADEQFQSRPR GGLKRKCPTI EMLLRKRVTP PDQLGLESEY LSWLLLQDAE  360
DEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-110	C2H2 family protein