PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022020.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 533aa    MW: 60875.9 Da    PI: 4.5656
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.71.5e-361625303374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  + L ++ ea++ g+ +l + ++  l e ++p g+   p++Rla+ + ++     ++              ++++ ++  aa++lf++++P+ +f+h +
  PCP022020.1 162 HMLKAFGEAMEMGQRKLEEVIMRCLLEKVNPLGQplePLERLAFNLCQGVVDNQQG-----------DYLKQESCKNYEAAFNLFYQIFPFGRFAHYA 248
                  55666666666666666666666666666666642335556666666655555444...........3333334566778999*************** PP

         GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrled 188
                  aN aIleav ++ e+vH++ fdi++G+Q   +++a a R++    l++T+++   ++       + + eet+++L++ A+++g++++ + ++ ++l +
  PCP022020.1 249 ANTAILEAVPEDvETVHVVEFDIGEGVQLSQMIEAVARRNKT---LKVTAIKWDVEEsdevapPHWRFEETKRQLQHHARSFGLNLKVEEIAIEDLVS 343
                  *********9999**************************765...******976555668899999************************97776655 PP

         GRAS 189 l.eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276
                  l +  + r     +E la n+++ l ++   +  ++    e+L+l k+l ++    ++++ + +  a++ n++ F   f   + +y al+ sle+++p
  PCP022020.1 344 LiKKANKR--DgrREFLAFNSMVGLPHMR--RRRSRGLLMEFLRLAKDLLANsargIITFGDGDacAKReNDSGFSSFFDANVVHYEALLGSLESSFP 437
                  51333334..346**************97..4444445799********87655669*****99765668**************************** PP

         GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSa 372
                  ++  e+r+++E +++++ +++    e+ + ++r  +l+ W      +G++  ++s k+ ++ak ++   +  g rv  e+ ++++l W++ pL+ v  
  PCP022020.1 438 SHLgEARMVMELMFVAPYVSSQAWFEKWN-EARGGNLHPW------FGLEGRRVSRKMLMEAKEIVGADSLFGVRVGgENGNEMTLEWNSIPLIRVET 528
                  999899****************9999998.999999****......8***********************999999967778889***********99 PP

         GRAS 373 Wr 374
                  W+
  PCP022020.1 529 WT 530
                  95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MMQSEMKFQT FWPCLNETNS TLDTNEYTEQ MGSSEFSSIF MPSDEFSETT SSFPFSTMFS  60
GEFEQLADCD HLLQATWMAE EEFPMELGGF ETNYLMGEIE NMYASVCDQL PSPQFFVEGN  120
RVWSPNSFVT SEASSMDVTS VQQSITLPRD EMEINNEVRI RHMLKAFGEA MEMGQRKLEE  180
VIMRCLLEKV NPLGQPLEPL ERLAFNLCQG VVDNQQGDYL KQESCKNYEA AFNLFYQIFP  240
FGRFAHYAAN TAILEAVPED VETVHVVEFD IGEGVQLSQM IEAVARRNKT LKVTAIKWDV  300
EESDEVAPPH WRFEETKRQL QHHARSFGLN LKVEEIAIED LVSLIKKANK RDGRREFLAF  360
NSMVGLPHMR RRRSRGLLME FLRLAKDLLA NSARGIITFG DGDACAKREN DSGFSSFFDA  420
NVVHYEALLG SLESSFPSHL GEARMVMELM FVAPYVSSQA WFEKWNEARG GNLHPWFGLE  480
GRRVSRKMLM EAKEIVGADS LFGVRVGGEN GNEMTLEWNS IPLIRVETWT NRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-17GRAS family protein