PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021704.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 388aa MW: 42532.2 Da PI: 5.011

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021704.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.8e-16	41	86	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v +G ++W++Iar + gR++k+c++rw + PCP021704.1 41 KGPWSPEEDAVLSRLVSNFGARNWSLIARGID-GRSGKSCRLRWCNQ 86 79****************************.*********985 PP
2	Myb_DNA-binding	51.5	2.3e-16	93	137	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T Ed +v a++ +G++ W++Iar ++ gRt++ +k++w++ PCP021704.1 93 RKPFTDAEDRMIVAAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 137 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MEMEVADDPA AVDIDAGDSG EEAAAGGGAG SRRKSGRDNV KGPWSPEEDA VLSRLVSNFG 60 ARNWSLIARG IDGRSGKSCR LRWCNQLDPA VKRKPFTDAE DRMIVAAHAV HGNKWAAIAR 120 LLPGRTDNAI KNHWNSTLKR RGMDPEKIKL ESGNMVEDVS LDKTKGSSEE TFSYGDVNSS 180 KSMEGREVSS FQHMDDQDEY NGSSEVQFSH EATEQPNLFR PVAQISAFSI YNQSNSQEPE 240 SSFPRPIPVQ GPLLRESKLD VGISKFLEGV YGELSVPDQC AHGCCCAQNG MNFQNSLLGP 300 EFMEFSEPPS FPSFELAAIA TDISNLAWLK SGLENNSVRG MSDAAGRITT NKSQGKMGRF 360 EDSRTNHLFP VEERNDRLMG MKTNVLST

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MEMEVADDPA AVDIDAGDSG EEAAAGGGAG SRRKSGRDNV KGPWSPEEDA VLSRLVSNFG  60
ARNWSLIARG IDGRSGKSCR LRWCNQLDPA VKRKPFTDAE DRMIVAAHAV HGNKWAAIAR  120
LLPGRTDNAI KNHWNSTLKR RGMDPEKIKL ESGNMVEDVS LDKTKGSSEE TFSYGDVNSS  180
KSMEGREVSS FQHMDDQDEY NGSSEVQFSH EATEQPNLFR PVAQISAFSI YNQSNSQEPE  240
SSFPRPIPVQ GPLLRESKLD VGISKFLEGV YGELSVPDQC AHGCCCAQNG MNFQNSLLGP  300
EFMEFSEPPS FPSFELAAIA TDISNLAWLK SGLENNSVRG MSDAAGRITT NKSQGKMGRF  360
EDSRTNHLFP VEERNDRLMG MKTNVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	2e-89	MYB family protein