PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021624.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 1291aa MW: 141984 Da PI: 9.0808

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021624.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.1	3.3e-14	825	906	1	83
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lL+ cA+av+++d+++ ++lL+++++++s + +p+qRla+yf+ +L+ar+a+s+ ++yk l ++ +s +++l+a+ l PCP021624.1 825 LRTLLTLCARAVAANDKRMRNELLKHIRQHSSLMAmgNPLQRLAHYFADGLEARMAGSGAQIYKDLVSKLAS---AADVLKAYYL 906 5789************************98654449**************************999998...5666666554 PP

Sequence ? help Back to Top
Protein Sequence Length: 1291 aa Download sequence
MVLKKRLDFG FNGFQVPTIP RAPRSARRRP HRKSVEDGQF CAFELLASLA GKLLQESESS 60 ASSNASEGNL QPAFGIDVKQ ERQDEHKPLK EECPDQGSSQ ESVSLGLTSQ NVGQKGILKE 120 ILCANSDTVL ERTSVITSSD SSAKAGRRAK SVISSSRPTF QNYSGKVEGG SPGIVESCYG 180 NVANGIEVQE DSKLLETGAL KIANPCSSKD PTELHAKYPA MLNGDSNVKL SLFRDPVPNA 240 SFSRHRNDIE LGSRDDDENF TRCIKPSNRV KVFRPPPRVG DRRIRKLLTS KYWKAAPKLR 300 ECEHYRYDGG VKTIYHKRKT FYNRERSQRD TLYKRRKLVD RSSVVTSDGG FSGESVSNSP 360 DNGDKTGPAA NGVSASVIGH QTSFCSEESH VKLRIKSFRV PELVIEVPET ETVGSLKRTV 420 MDAVNAILRD GLSVGVLVQG KNIKDDNRTL MQMGISSKDS LDSLGFMLEP SPVQASAFLC 480 SGDPPFSCEM VARSPRTPVL DSPMSDVLSD IPPITNSGSL AETKHEPVSS HIDILTNKTM 540 LESQAIVAIP EMSMEPLAIV PVSQKTKRSE LAQRRTRRPF SVSEVEALVT AVEELGTGRW 600 RDVKLRAFEN ADHRTYVDLK STPQKSLLNK EGESPFLRSF WTECWLPILT GANTKQSNTA 660 STRPCQHSED HRRTRPIGME LKALEAAELS FYELLGEKHS LSPPCDMTSY ADQNNESRDE 720 CHPSRSSDYN TTSWIGFGVV IRIESAVQFK RGSEEASRFL PNGNGQIVNL ESNTMLLNEG 780 KADDIRMGAE NGTIKNVQQH GQSNEASGRK GRGKKWGCKK EVVDLRTLLT LCARAVAAND 840 KRMRNELLKH IRQHSSLMAM GNPLQRLAHY FADGLEARMA GSGAQIYKDL VSKLASAADV 900 LKAYYLYLVI NVPHDAPERI LIAREVFGKQ AMNVIACEGS ERIERPDIQA VAGEEPEGRV 960 YATLNQEIAK VLLARLLGII ISAAATAYGL RARRGLLLKG GSESHDYTLL RRISNSNPVA 1020 QRLFLLDCYF LNPLVSYRCL NHISPETERK KGVKMSGAGK PDFFYREAQR LGYVARSAFK 1080 LLQMQKQYKL ITPGSSVLDL GCAPGAWLQV ACQSLGPLKN GGLVVGIDLK KVKVPAEHCD 1140 SRVQTVCADV MKLPRAHVRE LSPQQKGFSV VLSDMCPLVS GISSKDAALS LELGMQALNL 1200 AVGGAALAHC NNEVQTEESN DGATIISDDN GVLRRGGNLV IKLLESEDVQ EINKICKPLF 1260 RKASLLRPKA TRSSSREIYL ICQGLQSQAK T

Sequence ? help Back to Top

Protein Sequence Length: 1291 aa Download sequence

MVLKKRLDFG FNGFQVPTIP RAPRSARRRP HRKSVEDGQF CAFELLASLA GKLLQESESS  60
ASSNASEGNL QPAFGIDVKQ ERQDEHKPLK EECPDQGSSQ ESVSLGLTSQ NVGQKGILKE  120
ILCANSDTVL ERTSVITSSD SSAKAGRRAK SVISSSRPTF QNYSGKVEGG SPGIVESCYG  180
NVANGIEVQE DSKLLETGAL KIANPCSSKD PTELHAKYPA MLNGDSNVKL SLFRDPVPNA  240
SFSRHRNDIE LGSRDDDENF TRCIKPSNRV KVFRPPPRVG DRRIRKLLTS KYWKAAPKLR  300
ECEHYRYDGG VKTIYHKRKT FYNRERSQRD TLYKRRKLVD RSSVVTSDGG FSGESVSNSP  360
DNGDKTGPAA NGVSASVIGH QTSFCSEESH VKLRIKSFRV PELVIEVPET ETVGSLKRTV  420
MDAVNAILRD GLSVGVLVQG KNIKDDNRTL MQMGISSKDS LDSLGFMLEP SPVQASAFLC  480
SGDPPFSCEM VARSPRTPVL DSPMSDVLSD IPPITNSGSL AETKHEPVSS HIDILTNKTM  540
LESQAIVAIP EMSMEPLAIV PVSQKTKRSE LAQRRTRRPF SVSEVEALVT AVEELGTGRW  600
RDVKLRAFEN ADHRTYVDLK STPQKSLLNK EGESPFLRSF WTECWLPILT GANTKQSNTA  660
STRPCQHSED HRRTRPIGME LKALEAAELS FYELLGEKHS LSPPCDMTSY ADQNNESRDE  720
CHPSRSSDYN TTSWIGFGVV IRIESAVQFK RGSEEASRFL PNGNGQIVNL ESNTMLLNEG  780
KADDIRMGAE NGTIKNVQQH GQSNEASGRK GRGKKWGCKK EVVDLRTLLT LCARAVAAND  840
KRMRNELLKH IRQHSSLMAM GNPLQRLAHY FADGLEARMA GSGAQIYKDL VSKLASAADV  900
LKAYYLYLVI NVPHDAPERI LIAREVFGKQ AMNVIACEGS ERIERPDIQA VAGEEPEGRV  960
YATLNQEIAK VLLARLLGII ISAAATAYGL RARRGLLLKG GSESHDYTLL RRISNSNPVA  1020
QRLFLLDCYF LNPLVSYRCL NHISPETERK KGVKMSGAGK PDFFYREAQR LGYVARSAFK  1080
LLQMQKQYKL ITPGSSVLDL GCAPGAWLQV ACQSLGPLKN GGLVVGIDLK KVKVPAEHCD  1140
SRVQTVCADV MKLPRAHVRE LSPQQKGFSV VLSDMCPLVS GISSKDAALS LELGMQALNL  1200
AVGGAALAHC NNEVQTEESN DGATIISDDN GVLRRGGNLV IKLLESEDVQ EINKICKPLF  1260
RKASLLRPKA TRSSSREIYL ICQGLQSQAK T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	287	DRRIRKL
2	317	337	KRKTFYNRERSQRDTLYKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	2e-67	MYB_related family protein