PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021573.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 448aa MW: 48918.9 Da PI: 9.6859

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021573.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.2e-06	212	234	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F+ +nL+ H+ + H PCP021573.1 212 SCPECGEIFTKAENLELHQAVrH 234 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MSSSAMASSH KPKTQRKPTK QTHQKLQKHH ENKNPKPRKA EEKPAEKPPY WSVVRGLLTC 60 KHLQPVQLPQ KQPNEQQAME EASNAAKKCK KMRCSGSLCN NTKIMQRPEL LASPEVHKKR 120 ASSSMGSSSN SNEASSRSMK APLHEINGVV LTSSSSFSAV SSSSNNNSSA GGGGSFRAMP 180 FRRFSGCYEC RMVVDPVLGF ARDPSLRGSI CSCPECGEIF TKAENLELHQ AVRHAVSELG 240 PEDTSKNIVE IIFQSSWLKK QTPICKIDRI LKVHNTQKTI TKFEEYRDSI KAKATKLPKK 300 HPRCIADGNE LLRFHCTTFA CSLGLNGSSN LCNSIPHCNV CSIIKNGFNK FSGELTEQGI 360 LTTATSGRAH DKAVVAAEEG DKRAMLVCRV IAGRVKKSLE GSVGNGNVGM EEYDSVAGAV 420 GVYSNLDELY VSNPKAILPC FVVIYGGY

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MSSSAMASSH KPKTQRKPTK QTHQKLQKHH ENKNPKPRKA EEKPAEKPPY WSVVRGLLTC  60
KHLQPVQLPQ KQPNEQQAME EASNAAKKCK KMRCSGSLCN NTKIMQRPEL LASPEVHKKR  120
ASSSMGSSSN SNEASSRSMK APLHEINGVV LTSSSSFSAV SSSSNNNSSA GGGGSFRAMP  180
FRRFSGCYEC RMVVDPVLGF ARDPSLRGSI CSCPECGEIF TKAENLELHQ AVRHAVSELG  240
PEDTSKNIVE IIFQSSWLKK QTPICKIDRI LKVHNTQKTI TKFEEYRDSI KAKATKLPKK  300
HPRCIADGNE LLRFHCTTFA CSLGLNGSSN LCNSIPHCNV CSIIKNGFNK FSGELTEQGI  360
LTTATSGRAH DKAVVAAEEG DKRAMLVCRV IAGRVKKSLE GSVGNGNVGM EEYDSVAGAV  420
GVYSNLDELY VSNPKAILPC FVVIYGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein