PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021416.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 283aa MW: 30981.4 Da PI: 6.3552

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021416.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.4	1.4e-55	50	154	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi PCP021416.1 50 QLQMFWTYQrheIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 147 89***999999********************************************************************************* PP NF-YC 96 vprdelk 102 vprd++k PCP021416.1 148 VPRDDIK 154 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MDPNPNSGAP TSAAAPTQQP PQAQSSPYGA TQSSVPALPF HHLLQQQQQQ LQMFWTYQRH 60 EIESVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPVLFA KACELFILEL TIRSWLHAEE 120 NKRRTLQKND IAAAITRTDI FDFLVDIVPR DDIKEEAVGL GGMVGATASG VPYYYPPMGQ 180 PAGGPGGMMM GRPAVDPAGV YGVQPPSQAW QSVWQTAADD GSYGSGGNSG QGNLDGQRYC 240 VSYLSIQMWL LFGKTLMILD VGIVLLKYSV TGFVTVSRLL RQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	129	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-86	NF-YC family protein