PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021410.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 1706aa MW: 185449 Da PI: 6.2556

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021410.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.5e-10	789	832	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE el+++ + G++ +++Ia+ + ++t +c+++++k+ PCP021410.1 789 NPWTPEEKELFIQKLTTCGKD-FRKIASFLD-HKTTADCVEFYYKH 832 69***************99.*****.**********97 PP
2	Myb_DNA-binding	31.7	3.5e-10	1008	1048	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r++ R+ qck ++ PCP021410.1 1008 DWTDEEKSRFIQAVSSYGKD-FDMISRCIR-SRSQQQCKVFFS 1048 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1706 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWASGDF RRPPGHGKQG 60 GWHVFSDDSG HGYGSSRSGE KMVEDESFRS SFSRGDGRYG RNSRDNRGPP YSQRESKGYS 120 WETRSGSPNM PGRPSRVNNE QRSQDDMLTY SSHQQSDFGS AWDQIQLKDQ LDKMGGSTGL 180 SAGQKCEREN SLVSIDWKPL KWTRSGSMSS RGSGFSHSSS SKSMGPIDSN EAKVESQPKT 240 ATPVQSPSGE ATNCVTSAAP LEETTSRKKP RLGWGEGLAK YEKKKVDVPD GSMNKDAAVC 300 SVGNTEQAHS LSSSLPDKSP RVTAFSDCAS PATPSSVACS SSPGVEEKSF CKAVNVENDT 360 RNSCGSPGPM YQSHHEGFSF QLEKLDGNSI VNLDSSILEL LQSDDPSSVD SSIPRPTALN 420 KLLIWKGEIS KVLEVTESEI DSLENELKAL KSDSGGSCPR PATSSSLPVE EKDKSCKEQV 480 TNLTTRLSPL QIHSSGDTDL QKMCVDNGDQ VEFCGIVKDE DIDSPGTATS KFVESLPLVS 540 SDMTNKTGGS EDRDPIQTTK GEETCLVPSR YAEKTDPSTC GNSSMLLDSE VVALDSGVVD 600 KLCDSIFSAN KIFASRASDI FSKLLPKEHI SGVRASSSWK NDSLIKEKFA KRKRRLRFVE 660 RVITLKFKAF QHLWKEDMSV LSMRKYRPKS HKKFELSLRA TNNGHQKHRS SIRSRFSTPA 720 GSLSVVPTTE IINFTNKLLS DSQVKPYRNS LKMPALILDK EEKLATRFVS SNGLVEDPCA 780 VEKERALMNP WTPEEKELFI QKLTTCGKDF RKIASFLDHK TTADCVEFYY KHHKSDCFVK 840 TKKKPDMAKQ GKSSANTYLI SDGKKWNREM DAASLDILGA ASAIAAHADG GTRNRQTYSR 900 RLILGGYRNT NTSRGEDTTV ERSCSLDTIG NERETAAADV LAGICGSISS EAVSSCITSS 960 IDPGESYLEW KCQKGDSVVR RPLTPDVMQN VDDETCSDES CGEMDPSDWT DEEKSRFIQA 1020 VSSYGKDFDM ISRCIRSRSQ QQCKVFFSKA RKCLGLDLVH PGPGNGTSVG DDANGGGSDA 1080 EDACVLETGS GISSDKSGCN MNEDVPLSVT NMNDDEADPA ETMKLQTSPP RPEENNVIGE 1140 VDHGDGKPLK SLASDAFQAV DKPKLVFDGD TDIMESNAMG GNATENKILV AESRPVGEGI 1200 NSDPPNPECM VGEKLVGQIS SDRFGKKLEG GDERSNRDPS GCCLPASAHN SCGNTSDVAA 1260 DGSCSAPGLN PECPHQVSVE LNSVQKPSVI SLPHENAPAT AVSVPQDSAV IECEKSLSQD 1320 RMSSTLDLRE GSVGRDESRK HLSGLPVHAN VEASQVLRGY PLQMVPKKET NGDVSCGNLS 1380 EVKPDRNING HYMTQDGFLH FGNSKPQCSQ VDCPPVPLKV EQPGDARTAH SWSSSDSEKP 1440 SRNGDVKLFG KILSNPSSSS KPNGSIHENE EEGAHNQKFS NKSSNLNLTG HHSADGSSPL 1500 LKFDCSSYLG LENVPSRSYG GFWEGNKVQA GYSSFSDSAI LLAKYPAAFS NFPTSSSQME 1560 QQPPQAVLKT SDRSMNGISV FRGEEINGSN GVADYPVFSR GQDGGNKVQP FTVDVKQQQQ 1620 QRQDVFDIPK RNGFDAISSI QQQGRGSVGM NVVGRGGILV GGPCTVSDPV AAIRMHYAKT 1680 EQYGGQAGSI FRKEESWRGG KGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1706 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWASGDF RRPPGHGKQG  60
GWHVFSDDSG HGYGSSRSGE KMVEDESFRS SFSRGDGRYG RNSRDNRGPP YSQRESKGYS  120
WETRSGSPNM PGRPSRVNNE QRSQDDMLTY SSHQQSDFGS AWDQIQLKDQ LDKMGGSTGL  180
SAGQKCEREN SLVSIDWKPL KWTRSGSMSS RGSGFSHSSS SKSMGPIDSN EAKVESQPKT  240
ATPVQSPSGE ATNCVTSAAP LEETTSRKKP RLGWGEGLAK YEKKKVDVPD GSMNKDAAVC  300
SVGNTEQAHS LSSSLPDKSP RVTAFSDCAS PATPSSVACS SSPGVEEKSF CKAVNVENDT  360
RNSCGSPGPM YQSHHEGFSF QLEKLDGNSI VNLDSSILEL LQSDDPSSVD SSIPRPTALN  420
KLLIWKGEIS KVLEVTESEI DSLENELKAL KSDSGGSCPR PATSSSLPVE EKDKSCKEQV  480
TNLTTRLSPL QIHSSGDTDL QKMCVDNGDQ VEFCGIVKDE DIDSPGTATS KFVESLPLVS  540
SDMTNKTGGS EDRDPIQTTK GEETCLVPSR YAEKTDPSTC GNSSMLLDSE VVALDSGVVD  600
KLCDSIFSAN KIFASRASDI FSKLLPKEHI SGVRASSSWK NDSLIKEKFA KRKRRLRFVE  660
RVITLKFKAF QHLWKEDMSV LSMRKYRPKS HKKFELSLRA TNNGHQKHRS SIRSRFSTPA  720
GSLSVVPTTE IINFTNKLLS DSQVKPYRNS LKMPALILDK EEKLATRFVS SNGLVEDPCA  780
VEKERALMNP WTPEEKELFI QKLTTCGKDF RKIASFLDHK TTADCVEFYY KHHKSDCFVK  840
TKKKPDMAKQ GKSSANTYLI SDGKKWNREM DAASLDILGA ASAIAAHADG GTRNRQTYSR  900
RLILGGYRNT NTSRGEDTTV ERSCSLDTIG NERETAAADV LAGICGSISS EAVSSCITSS  960
IDPGESYLEW KCQKGDSVVR RPLTPDVMQN VDDETCSDES CGEMDPSDWT DEEKSRFIQA  1020
VSSYGKDFDM ISRCIRSRSQ QQCKVFFSKA RKCLGLDLVH PGPGNGTSVG DDANGGGSDA  1080
EDACVLETGS GISSDKSGCN MNEDVPLSVT NMNDDEADPA ETMKLQTSPP RPEENNVIGE  1140
VDHGDGKPLK SLASDAFQAV DKPKLVFDGD TDIMESNAMG GNATENKILV AESRPVGEGI  1200
NSDPPNPECM VGEKLVGQIS SDRFGKKLEG GDERSNRDPS GCCLPASAHN SCGNTSDVAA  1260
DGSCSAPGLN PECPHQVSVE LNSVQKPSVI SLPHENAPAT AVSVPQDSAV IECEKSLSQD  1320
RMSSTLDLRE GSVGRDESRK HLSGLPVHAN VEASQVLRGY PLQMVPKKET NGDVSCGNLS  1380
EVKPDRNING HYMTQDGFLH FGNSKPQCSQ VDCPPVPLKV EQPGDARTAH SWSSSDSEKP  1440
SRNGDVKLFG KILSNPSSSS KPNGSIHENE EEGAHNQKFS NKSSNLNLTG HHSADGSSPL  1500
LKFDCSSYLG LENVPSRSYG GFWEGNKVQA GYSSFSDSAI LLAKYPAAFS NFPTSSSQME  1560
QQPPQAVLKT SDRSMNGISV FRGEEINGSN GVADYPVFSR GQDGGNKVQP FTVDVKQQQQ  1620
QRQDVFDIPK RNGFDAISSI QQQGRGSVGM NVVGRGGILV GGPCTVSDPV AAIRMHYAKT  1680
EQYGGQAGSI FRKEESWRGG KGDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein