PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021355.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 723aa MW: 80184.4 Da PI: 4.8652

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021355.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.6e-09	20	65	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT Ed+l+ +a ++ + +W++Ia++++ g+t+k++ +++ + PCP021355.1 20 PWTRFEDKLFEQALVRFSDDlpdRWERIAQELP-GKTPKEVLEHYED 65 7***************99*********.********976 PP
2	Myb_DNA-binding	41.3	3.6e-13	113	157	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + k++G g+W++I+r + +Rt+ q+ s+ qky PCP021355.1 113 PWTPQEHKLFLIGLKKFGRGDWRSISRNVVVTRTPTQVASHAQKY 157 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MFQETAPCWS DVAQSAASAP WTRFEDKLFE QALVRFSDDL PDRWERIAQE LPGKTPKEVL 60 EHYEDLVHDV LEIDSGRVNL PSYADECWDT AGQITFGSKV NKHGEPERKK GTPWTPQEHK 120 LFLIGLKKFG RGDWRSISRN VVVTRTPTQV ASHAQKYFLR QSSVKKERKR SSIHDITTVE 180 SNSGPVPADR NWIPPPADPT HQSPLQQLTP QSRVPDQGDP LQGDFPEVIE EYLEHGVMKC 240 IAFNRRGTLL AAGCSDGNCI IWDFETRGIA KELHDKDCVA AITSVCWSKY GHRILVSAAD 300 KSLTLWDVVS GEKIMRTVLQ QTPLQARLHP GSPTPSLCLA CPLSSAPIIV DLNTGSTVVL 360 PVSIPDSNPG LVPLSRNKIS EGTPPFSPTA ACFNKYGDLI YAGNSKGEIL VIDYKSVQVR 420 AVVPISGGSV IKNIVFSRNG QYLLTNSNDR TIRIYENLLP LKDGLKTLDD LNETLDGTDG 480 IEKLKAVGSK CLTLFREFQD AITKMHWKAP CFSGDGEWVI GGSASKGEHK IYIWDRAGHL 540 VKILEGPKEA LIDLVWHPVH PIVVSVSLTG LVYIWAKDYT ENWSAFAPDF KELEENEEYV 600 EREDEFDLIP ETEKVKGSDI NEDDEVDIVT VEKDSAFSDS DMSQEELCFL PAIPSPDVPD 660 QQDKCIESSS KLVDSNSGSP ISEEGTPNGC AIDHASSPLE EDAGATRLKR KRKPSEKGLE 720 FQA

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MFQETAPCWS DVAQSAASAP WTRFEDKLFE QALVRFSDDL PDRWERIAQE LPGKTPKEVL  60
EHYEDLVHDV LEIDSGRVNL PSYADECWDT AGQITFGSKV NKHGEPERKK GTPWTPQEHK  120
LFLIGLKKFG RGDWRSISRN VVVTRTPTQV ASHAQKYFLR QSSVKKERKR SSIHDITTVE  180
SNSGPVPADR NWIPPPADPT HQSPLQQLTP QSRVPDQGDP LQGDFPEVIE EYLEHGVMKC  240
IAFNRRGTLL AAGCSDGNCI IWDFETRGIA KELHDKDCVA AITSVCWSKY GHRILVSAAD  300
KSLTLWDVVS GEKIMRTVLQ QTPLQARLHP GSPTPSLCLA CPLSSAPIIV DLNTGSTVVL  360
PVSIPDSNPG LVPLSRNKIS EGTPPFSPTA ACFNKYGDLI YAGNSKGEIL VIDYKSVQVR  420
AVVPISGGSV IKNIVFSRNG QYLLTNSNDR TIRIYENLLP LKDGLKTLDD LNETLDGTDG  480
IEKLKAVGSK CLTLFREFQD AITKMHWKAP CFSGDGEWVI GGSASKGEHK IYIWDRAGHL  540
VKILEGPKEA LIDLVWHPVH PIVVSVSLTG LVYIWAKDYT ENWSAFAPDF KELEENEEYV  600
EREDEFDLIP ETEKVKGSDI NEDDEVDIVT VEKDSAFSDS DMSQEELCFL PAIPSPDVPD  660
QQDKCIESSS KLVDSNSGSP ISEEGTPNGC AIDHASSPLE EDAGATRLKR KRKPSEKGLE  720
FQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	708	714	LKRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-74	MYB family protein