PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021107.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 269aa    MW: 30655.6 Da    PI: 7.2831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021107.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004895117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ C++ F++   L  H+++H
  PCP021107.1  95 FACSFCKREFRSAQALGGHMNVH 117
                  78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MDDQTQESLA SLNNKECITR HDDVIMPIVQ YAVNLKRRPI TTNCSHYQRQ MTNLLLLQDH  60
LSTCGKIPKR SRSMNCINFF EGENLCDISW ATRNFACSFC KREFRSAQAL GGHMNVHRRD  120
RARLRLLPPT LSSEICPQNP NPSSYFATSS SSSPSSCHSL FSPSLRTRVS APSSASSMDE  180
NKKPRYDYWP ENHFPDLIPK KGMGGGVDHE AGHIFKGFSQ RDDEYFNKID LEKENNIIRV  240
DLGLDLDLDI GLLKDHKEEV DLELRLGHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-12C2H2 family protein