PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021038.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 634aa    MW: 69670.6 Da    PI: 5.1674
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021038.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.62.7e-1352666251374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+ L++cAeav++++++la+al++++  la +++ +m+++a++f+eALa+r+++    +y    p++    ++s + + +  f+e++P lkf+h+ta
  PCP021038.1 266 LVHGLMACAEAVQQNNFNLAKALVTQIGYLAGSQAGAMRKVATFFAEALAQRIFQ----VY----PQSPI--DHSFSDMLQMHFYETCPNLKFAHFTA 353
                  6899**************************************************9....44....33332..23444445556*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIle+++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+s++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++
  PCP021038.1 354 NQAILESLQGKTRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 451
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ F++rf e+l+yys+lfdsle +   +++ ++++++++lg+
  PCP021038.1 452 RPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFMDRFNESLHYYSTLFDSLEGS---ANSRDKVMSEVYLGK 542
                  **88899*********************....**********************************************99...58999999******* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvvaceg +r+erhetl +Wr+r+++a F pv+l+++a kqa++ll+ ++ +dgyrvee++g+++l W++rpL+++SaW+
  PCP021038.1 543 QICNVVACEGVDRVERHETLTQWRARFGSADFVPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCMMLAWHTRPLIATSAWK 625
                  **********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    
MKGEHQTHQL NQYPPPQHPD PSMASTSTGG GFGKAKMWED ESHRIDGGMD ELLAVLGYKV  60
RSSDMAEVAQ KLEQLEEFMG CAQEDGLSQL ASDTVHYNPA DLSTWLESMI SEINLPPPNF  120
DPLMGGAVAG MQPNQQQVQL VDDPFLARGE SSITTVDFPD QRKSKSISTS PPQTVFEDCN  180
SSSSYYDFKS IPGNAVFTQT RLDSPSREPK RLKSSSGSSP SELLFNRPAA SSLPQPQQPI  240
SLPATAESSP TRPALIVDSQ ENGVRLVHGL MACAEAVQQN NFNLAKALVT QIGYLAGSQA  300
GAMRKVATFF AEALAQRIFQ VYPQSPIDHS FSDMLQMHFY ETCPNLKFAH FTANQAILES  360
LQGKTRVHVI DFSMNQGMQW PALMQALALR PGGPPAFRLT GIGPPASDNS DHLQEVGWKL  420
AQLAETIHVE FEYRGFVANS LADLDASMLE LRPSEVESVA VNSVFELHKL LARPGAIEKV  480
LSVVKQMKPE IVTVVEQEAN HNGPVFMDRF NESLHYYSTL FDSLEGSANS RDKVMSEVYL  540
GKQICNVVAC EGVDRVERHE TLTQWRARFG SADFVPVHLG SNAFKQASML LALFAGGDGY  600
RVEENDGCMM LAWHTRPLIA TSAWKPAYNS VMAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein