PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020931.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 804aa MW: 86655.9 Da PI: 7.4981

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020931.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.9e-08	12	54	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e d+ + +a + ++ + +W++I + + g+tl+++k+++ PCP020931.1 12 WTREQDKSFENALATYPEDssdRWEKIVADVH-GKTLEEIKHHY 54 ******************************.********9 PP
2	Myb_DNA-binding	25.8	2.6e-08	168	205	10	47
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky PCP020931.1 168 RLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 205 689999*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MTVEEVVSSS LWTREQDKSF ENALATYPED SSDRWEKIVA DVHGKTLEEI KHHYDLLLED 60 LTQIEAGVVP LPCYNSSEGS TSHASDEGTN KKGGHSGNYS SESNQGSKAS RADQERRKGI 120 AWTEDEHSYL HIALQHWAKK PVFLARNLDV NSNCYHENWF IYGSIELRLF LLGLEKYGKG 180 DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS IHDITSVNNG EISAAQGPIT 240 GQANGAAVGS SGKSPKQSPA GPPGVGMYGA PSIGQPIGGP LVSAVGTPVN LPAPPHMAYG 300 VRAPVPGGVV PGAPMSMVPM TYPMPHSSHS SPNPPESESK APWTVSDIAA AVNGRIVKWG 360 PPGTISTDTR TLQPKQWFFA IAGPNFDAHD FVTPELSRRG CAGVIGNRVC ENWDRGFVEC 420 HGNTVVSLKK MASYARNRFH GEVVGVTGTV GKTSTKAMIA LALESSTGLV HQSHGNWNNE 480 IGVALSLIGM PRNAGVVVLE MGMSGKGEIL ELARTARPTV RLILNVGASH FCNFSSLEEI 540 AIAKGEILAE AKPGDVCVLN ADDPLVMSLP VPYGVKKVLF GRRRTVGCHV RLVVSESTNR 600 GLGVRVVLQN HQEMVEFVIP SPGVHLGVNA CAAAAVATLL GVSLSQIGVR LSAFSPVHMR 660 LELEIARNGI KIVNDAYNAN PVSTKAAIDV LESIDCRGKR IAILGDMLEL GGIEMESHEM 720 ILKQCRSARI DLVGLVGERF CAAAASMKSL DEMNIVYAID SEILVQEIVK MVNCNDVVLV 780 KGSRGLQMEK VVNAIKLMES NNPI

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MTVEEVVSSS LWTREQDKSF ENALATYPED SSDRWEKIVA DVHGKTLEEI KHHYDLLLED  60
LTQIEAGVVP LPCYNSSEGS TSHASDEGTN KKGGHSGNYS SESNQGSKAS RADQERRKGI  120
AWTEDEHSYL HIALQHWAKK PVFLARNLDV NSNCYHENWF IYGSIELRLF LLGLEKYGKG  180
DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS IHDITSVNNG EISAAQGPIT  240
GQANGAAVGS SGKSPKQSPA GPPGVGMYGA PSIGQPIGGP LVSAVGTPVN LPAPPHMAYG  300
VRAPVPGGVV PGAPMSMVPM TYPMPHSSHS SPNPPESESK APWTVSDIAA AVNGRIVKWG  360
PPGTISTDTR TLQPKQWFFA IAGPNFDAHD FVTPELSRRG CAGVIGNRVC ENWDRGFVEC  420
HGNTVVSLKK MASYARNRFH GEVVGVTGTV GKTSTKAMIA LALESSTGLV HQSHGNWNNE  480
IGVALSLIGM PRNAGVVVLE MGMSGKGEIL ELARTARPTV RLILNVGASH FCNFSSLEEI  540
AIAKGEILAE AKPGDVCVLN ADDPLVMSLP VPYGVKKVLF GRRRTVGCHV RLVVSESTNR  600
GLGVRVVLQN HQEMVEFVIP SPGVHLGVNA CAAAAVATLL GVSLSQIGVR LSAFSPVHMR  660
LELEIARNGI KIVNDAYNAN PVSTKAAIDV LESIDCRGKR IAILGDMLEL GGIEMESHEM  720
ILKQCRSARI DLVGLVGERF CAAAASMKSL DEMNIVYAID SEILVQEIVK MVNCNDVVLV  780
KGSRGLQMEK VVNAIKLMES NNPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-108	MYB family protein