PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020898.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 936aa MW: 107229 Da PI: 8.3318

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020898.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.6	2.9e-13	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lv +++++G +W+ ++ g+ R++k+c++rw +yl PCP020898.1 16 KGPWSPEEDQKLVVYIQRYGIWNWSQMPKPAGLARSGKSCRLRWVNYL 63 79****************99**********************97 PP
2	Myb_DNA-binding	52.6	1e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++++ G++ W++Ia++++ gRt++++k++w+++l PCP020898.1 69 RGNFSKDEEETILELHQAIGNR-WSAIAARLP-GRTDNEIKNHWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence
MAKRTQRCEK TVARKKGPWS PEEDQKLVVY IQRYGIWNWS QMPKPAGLAR SGKSCRLRWV 60 NYLRPDIKRG NFSKDEEETI LELHQAIGNR WSAIAARLPG RTDNEIKNHW NTHLKKRFKA 120 AIESVHEEAK GFGDKEASKN KLSETEQLFL VDEATRASSS KMETTSSTSA SSRLFCPVWE 180 FDDRKGQIAE QSICASGVTF GDLQSLDSQV WQQEPIFPCD SYINHATSDD WADILSTANT 240 LSCMLVSYFG LISNSQGDAK GSGDNNEDLL AFWAPFLLLH LGGPDTITAF ALEDNTLWLR 300 HFLGLVFQVI AAVYVFIQSF PTNKLWPPTL LLFLAGTIKY AERTRALYRA SLDNFKESLI 360 KKPDPGPNYA KLMEEYSSKK DAKLPTRIEL TAERSKESRK VTYVAEQGDM EDNFAVVRHA 420 YHFYEIFRGL IVDLIFSFHE GFESRAFFHG RSAEETFGLI AIELNFMYEA LFTKAVVVHS 480 KLGCLFRAIS FTAVFIALVF FYKLEKKAFH KVDVGITYTL LYGALCLDSI AIFLVIFSEW 540 TVTAMHKSWQ KSWVAKILGK YLNLKKPRWS TESTTCLEWC RQILFRRWCE SISSFNFIHY 600 SLKEHRKLSS NIFDYFGIGY IAIIDLFGLK DLRDKMKYRT SRPLTKGLWE FIFKELKAKS 660 VLADDPETAK RISTARGDWI LQDSEWNDAQ HATLLSYVVD VDYDQSILLW HIATELCYNC 720 EEKETSRSES SKNETSRHES SKNETSRHES SKNETSRRES SKNEPSRREI SKTLSDYMLY 780 LLVMQPSLTS SVAGIGQIRF RDTCAEAKKF FSRRELRKEG EQAEELVACK SMLEVNTDVK 840 PADVKGDRSK SVLFDACILA KGLIKMEDKK WDLMSRVWVE LLSYAACHCR AKDHAQLLSK 900 GGELVTFVWL LMAHFGIGEQ FQINEGHARA KLIVGK

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence

MAKRTQRCEK TVARKKGPWS PEEDQKLVVY IQRYGIWNWS QMPKPAGLAR SGKSCRLRWV  60
NYLRPDIKRG NFSKDEEETI LELHQAIGNR WSAIAARLPG RTDNEIKNHW NTHLKKRFKA  120
AIESVHEEAK GFGDKEASKN KLSETEQLFL VDEATRASSS KMETTSSTSA SSRLFCPVWE  180
FDDRKGQIAE QSICASGVTF GDLQSLDSQV WQQEPIFPCD SYINHATSDD WADILSTANT  240
LSCMLVSYFG LISNSQGDAK GSGDNNEDLL AFWAPFLLLH LGGPDTITAF ALEDNTLWLR  300
HFLGLVFQVI AAVYVFIQSF PTNKLWPPTL LLFLAGTIKY AERTRALYRA SLDNFKESLI  360
KKPDPGPNYA KLMEEYSSKK DAKLPTRIEL TAERSKESRK VTYVAEQGDM EDNFAVVRHA  420
YHFYEIFRGL IVDLIFSFHE GFESRAFFHG RSAEETFGLI AIELNFMYEA LFTKAVVVHS  480
KLGCLFRAIS FTAVFIALVF FYKLEKKAFH KVDVGITYTL LYGALCLDSI AIFLVIFSEW  540
TVTAMHKSWQ KSWVAKILGK YLNLKKPRWS TESTTCLEWC RQILFRRWCE SISSFNFIHY  600
SLKEHRKLSS NIFDYFGIGY IAIIDLFGLK DLRDKMKYRT SRPLTKGLWE FIFKELKAKS  660
VLADDPETAK RISTARGDWI LQDSEWNDAQ HATLLSYVVD VDYDQSILLW HIATELCYNC  720
EEKETSRSES SKNETSRHES SKNETSRHES SKNETSRRES SKNEPSRREI SKTLSDYMLY  780
LLVMQPSLTS SVAGIGQIRF RDTCAEAKKF FSRRELRKEG EQAEELVACK SMLEVNTDVK  840
PADVKGDRSK SVLFDACILA KGLIKMEDKK WDLMSRVWVE LLSYAACHCR AKDHAQLLSK  900
GGELVTFVWL LMAHFGIGEQ FQINEGHARA KLIVGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	5e-52	MYB family protein