PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP020788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25620 Da PI: 9.8171 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s+ k H++t+ PCP020788.1 118 WQCERCSKKYAVQSDWKAHMKTC 140 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MVRFSGVVLV LMVSLLLAST GVQSPASSPA KSPALSPKQA PAAPSPSSTA PSSSPSSSPV 60 QLGEVTEEEL KQRTSKEVRK RVYVCPETSC VHNNPTQALG DLTGIKKHFC RKHGEKKWQC 120 ERCSKKYAVQ SDWKAHMKTC KYYRAFECGF ETAEERKQQQ WRSRVGEWRP GLGRHSRSTR 180 PDGHGAKIAE MEAASTGEAA RLGATLETVK GELAHLKREH EKEKESWEAA SGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.2 | 8e-41 | C2H2 family protein |