PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020557.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 1009aa MW: 114412 Da PI: 7.4112

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020557.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.6e-09	770	816	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEde+l+ +v++ Gg++W++ ++ g++R++ +c r ++y PCP020557.1 770 KGPWLEEEDERLKTYVNLKGGRRWDALVKESGLRRSGRSCSMRSLNY 816 79**************************************7776666 PP
2	Myb_DNA-binding	38.7	2.3e-12	830	868	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 E++ ++++++++G++ W+ I++ ++ gRt++++k++w+++l PCP020557.1 830 EEKTILQLHQRWGNK-WSMISQALP-GRTDNEIKNYWRTHL 868 99***********.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MSNLNKLDFS ALEVFGRNYL KWVQDVNLHL TAKGIRATIE APIVDKLVDE AQKAIAMIFI 60 RRHIHDALKT EYLAEEDPRN LWLALVDCFD HQKDIYLPEA RHDWQHLRFQ NFKSVNEYNF 120 ENQLLMKNHQ ARPTGSNAAP EAHMTYSNSH QRQKIRHGRG NGRQVQPWAQ VFSSLEGDKH 180 ANVLVERREL SCKGDKITYT RCKHTCKDIC TPRTSITRLG RPDIPEGGEA TPSMWQGTLV 240 ASQSRDPTLK CGRPLGSKDS QPRKRKMAPT SNPSLNLINA HSFVPTHKVI LYYDDASEET 300 CRLPENHEIS IYYTVLDKVW NRNEMTVDDA FLYSVATDIM LSDDIEPCSV AECRLYVDDM 360 KLIGTPAELE EIAAHLKSEF EMKNLGKTRY CLGLEIKHCS DGILEDEEEI LEPEVPYLSA 420 TGALLYLAQC TRPDISFTVN LLARYSNVPT RRHWNGVKDI FHYLKDTAIS WRSTKQTLVA 480 TLSNHAEILA LHEASFEEGT HQGRQHHAHS AKVLLLISSS SIRTLKSSKS VPRTTWPISS 540 PSRCPSLLFR SLSKESEAKI LFLGLDNSGK TTFLHMLKDE CAKSPQKWSD RGWANWEVVF 600 VTIEMEPEPG LYQSAEKTRL KTKAFEVYVR KKDMSRKGGG SASSLPKDVP WRASNIKPIP 660 KIHHSPLLRI APNPTSNYAL SVMKHPNPVG SGLAMEAIVE SAGPDCIVPG QVAPVKLLGL 720 KVWPIEVNFK FLEPVERELK QLGRAKPMVE FPQPSGVSVR AAVEGENLLK GPWLEEEDER 780 LKTYVNLKGG RRWDALVKES GLRRSGRSCS MRSLNYLCPN IKHGKITIIE EKTILQLHQR 840 WGNKWSMISQ ALPGRTDNEI KNYWRTHLKK KIEIQDGNFQ CTLNKNQQGI FCQEGDMNEE 900 KYDFDQNHVS VKNLFETKVT SSDDLGLSDF AATNSPYETQ LSEWISELSS EQSGTTYNQD 960 CNSVESDLCH LKWTPDDSDA WDCRFSLGHE LTDNSVKCGS NEIKMSNAS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MSNLNKLDFS ALEVFGRNYL KWVQDVNLHL TAKGIRATIE APIVDKLVDE AQKAIAMIFI  60
RRHIHDALKT EYLAEEDPRN LWLALVDCFD HQKDIYLPEA RHDWQHLRFQ NFKSVNEYNF  120
ENQLLMKNHQ ARPTGSNAAP EAHMTYSNSH QRQKIRHGRG NGRQVQPWAQ VFSSLEGDKH  180
ANVLVERREL SCKGDKITYT RCKHTCKDIC TPRTSITRLG RPDIPEGGEA TPSMWQGTLV  240
ASQSRDPTLK CGRPLGSKDS QPRKRKMAPT SNPSLNLINA HSFVPTHKVI LYYDDASEET  300
CRLPENHEIS IYYTVLDKVW NRNEMTVDDA FLYSVATDIM LSDDIEPCSV AECRLYVDDM  360
KLIGTPAELE EIAAHLKSEF EMKNLGKTRY CLGLEIKHCS DGILEDEEEI LEPEVPYLSA  420
TGALLYLAQC TRPDISFTVN LLARYSNVPT RRHWNGVKDI FHYLKDTAIS WRSTKQTLVA  480
TLSNHAEILA LHEASFEEGT HQGRQHHAHS AKVLLLISSS SIRTLKSSKS VPRTTWPISS  540
PSRCPSLLFR SLSKESEAKI LFLGLDNSGK TTFLHMLKDE CAKSPQKWSD RGWANWEVVF  600
VTIEMEPEPG LYQSAEKTRL KTKAFEVYVR KKDMSRKGGG SASSLPKDVP WRASNIKPIP  660
KIHHSPLLRI APNPTSNYAL SVMKHPNPVG SGLAMEAIVE SAGPDCIVPG QVAPVKLLGL  720
KVWPIEVNFK FLEPVERELK QLGRAKPMVE FPQPSGVSVR AAVEGENLLK GPWLEEEDER  780
LKTYVNLKGG RRWDALVKES GLRRSGRSCS MRSLNYLCPN IKHGKITIIE EKTILQLHQR  840
WGNKWSMISQ ALPGRTDNEI KNYWRTHLKK KIEIQDGNFQ CTLNKNQQGI FCQEGDMNEE  900
KYDFDQNHVS VKNLFETKVT SSDDLGLSDF AATNSPYETQ LSEWISELSS EQSGTTYNQD  960
CNSVESDLCH LKWTPDDSDA WDCRFSLGHE LTDNSVKCGS NEIKMSNAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	619	632	RLKTKAFEVYVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	4e-48	MYB family protein