PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020454.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7899.43 Da    PI: 11.3504
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020454.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 kri++k++rqvtfskRr+g++KKA ELSvLC+++v ++ifs++g+lye++s
  PCP020454.1  9 KRIDDKIRRQVTFSKRRTGLMKKARELSVLCGVDVGLVIFSPKGRLYEFCS 59
                 79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    
MGRGKVQLKR IDDKIRRQVT FSKRRTGLMK KARELSVLCG VDVGLVIFSP KGRLYEFCSG  60
ESGRLLSTIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.38e-29MIKC_MADS family protein