PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020239.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Protein Properties

Length: 1308aa MW: 147020 Da PI: 8.9441

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020239.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.3e-18	141	228	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k++++s+v + +l lp +f++e+ +k ++ +++lede+g++++ + +++ + l++GW+ F+ +++L++gD +vF+l++ ++f ++ + PCP020239.1 141 FVKTMVRSHVYSCFWLGLPTRFCDEYLSK-TG-SDMVLEDEHGKEYDAVY--IGSRTG--LSGGWRAFALEHKLDDGDALVFELTEPTRF--KIYI 228 89**********************655.34.49***********..566544..*********************9876666..4444 PP

Sequence ? help Back to Top
Protein Sequence Length: 1308 aa Download sequence
MVAIAATTYE EARNQRLEEN KRKFQDLGIS SISKTLTHLT ASPNKTQHRV SKPKARNACL 60 DIEPRRSSRQ RNTVQTYRDE VDIDLSSLRK RSRSRSSSSF CGSYLARPME EVRLCSYEER 120 QAALKAAEKL LENLQTDNPS FVKTMVRSHV YSCFWLGLPT RFCDEYLSKT GSDMVLEDEH 180 GKEYDAVYIG SRTGLSGGWR AFALEHKLDD GDALVFELTE PTRFKIYIVK VSSMSSIKSI 240 VDKEDSPSAE NTLKTAVKPN SESTQKRRTK RGSVSDIDDS QPSPGSESDQ RRRSKRGIVP 300 PTDDAKVPTD LESNQIRRSK RGAAPVADDS KTNFNSESNQ LRSPVYNKLC IADVKEVISV 360 LLSRKFKLQT TRSSEFMGFR DEVSRNATLE SDIIVVVIGS GIWPKSKSFK TNVLVLFPKG 420 GKQMHDLVHD LAELISKSEI LTKDLCDTGK ALEIRHVAWV STFTLENIPK RSVGKLRSLF 480 SNKGEVPSNI LSRFKALRVL NLSNANIKEL PVSVGRMKHL RYLDISETRF KALPKSIGKL 540 YNLQTLRATD CALEKFPKEL QNLINLRHIY FDGSTKFPQG LKQLTCLQTL PYFSVGNELG 600 RQIEELADLQ QLRGELIVCN LEHVKNGEEA KKAKLKDKRK ICHLSFQWTK DRLITNNNEE 660 GDVLEGLRPH SELESLSIEN FMGDKFPLWM MSGSLLLNNL KKIQLLGCDK CEGVPPLGHL 720 PNLTELKISG MANLKCVGAE FYGYDHVHNV ATTSKEIITL FPALKVLNIS SCGDLIEWKK 780 APTMSAQKVV VFPCLEKLTI KGCSKLRNVP SHFPSLQKLK IISSDSGKPI KEVSNGLTTL 840 TFLKIESIKK LTCLPQGILK NNNNLSSLEI RDCNDLTCIA PDVFGLPGSL ERLDISICEK 900 LRHLTDGLDT LPLLEYLSIR RCPSLELIPI TQGMTSLREL RITYCEGLSS LPSGLEYCSS 960 LQNLSISNCG GVTSFPFYTL ARLRRLDIWD CNGLSGPLSV WASLVELIIV GGNNLTSIEI 1020 KGGMSSLQHL RISNCKELSS LPALPQQCPS LQHLFIRKCP KVAWFGVQSS SISLQSFSDW 1080 RTFTSLRELR IEGECERLES WVSRLQFPLS LEKLVLKGFP NLEILPSLDN LNSLRELGIV 1140 NWKKLKYLPM GLQQLPPLKI LEVGGFWEEL DCFPDFQVGS LMHLTGLELT GWPKLKSLPQ 1200 QIQHLTSLTS LWVRNFDGVE TLPEWLGSLT SLTYLRIGGC KNLMNLPSVQ AMQRLTKLRT 1260 LNIYECHPLL KQRCRDSGTD WPKISHIPYI EMASIFLLAC CGVSRDAQ

Sequence ? help Back to Top

Protein Sequence Length: 1308 aa Download sequence

MVAIAATTYE EARNQRLEEN KRKFQDLGIS SISKTLTHLT ASPNKTQHRV SKPKARNACL  60
DIEPRRSSRQ RNTVQTYRDE VDIDLSSLRK RSRSRSSSSF CGSYLARPME EVRLCSYEER  120
QAALKAAEKL LENLQTDNPS FVKTMVRSHV YSCFWLGLPT RFCDEYLSKT GSDMVLEDEH  180
GKEYDAVYIG SRTGLSGGWR AFALEHKLDD GDALVFELTE PTRFKIYIVK VSSMSSIKSI  240
VDKEDSPSAE NTLKTAVKPN SESTQKRRTK RGSVSDIDDS QPSPGSESDQ RRRSKRGIVP  300
PTDDAKVPTD LESNQIRRSK RGAAPVADDS KTNFNSESNQ LRSPVYNKLC IADVKEVISV  360
LLSRKFKLQT TRSSEFMGFR DEVSRNATLE SDIIVVVIGS GIWPKSKSFK TNVLVLFPKG  420
GKQMHDLVHD LAELISKSEI LTKDLCDTGK ALEIRHVAWV STFTLENIPK RSVGKLRSLF  480
SNKGEVPSNI LSRFKALRVL NLSNANIKEL PVSVGRMKHL RYLDISETRF KALPKSIGKL  540
YNLQTLRATD CALEKFPKEL QNLINLRHIY FDGSTKFPQG LKQLTCLQTL PYFSVGNELG  600
RQIEELADLQ QLRGELIVCN LEHVKNGEEA KKAKLKDKRK ICHLSFQWTK DRLITNNNEE  660
GDVLEGLRPH SELESLSIEN FMGDKFPLWM MSGSLLLNNL KKIQLLGCDK CEGVPPLGHL  720
PNLTELKISG MANLKCVGAE FYGYDHVHNV ATTSKEIITL FPALKVLNIS SCGDLIEWKK  780
APTMSAQKVV VFPCLEKLTI KGCSKLRNVP SHFPSLQKLK IISSDSGKPI KEVSNGLTTL  840
TFLKIESIKK LTCLPQGILK NNNNLSSLEI RDCNDLTCIA PDVFGLPGSL ERLDISICEK  900
LRHLTDGLDT LPLLEYLSIR RCPSLELIPI TQGMTSLREL RITYCEGLSS LPSGLEYCSS  960
LQNLSISNCG GVTSFPFYTL ARLRRLDIWD CNGLSGPLSV WASLVELIIV GGNNLTSIEI  1020
KGGMSSLQHL RISNCKELSS LPALPQQCPS LQHLFIRKCP KVAWFGVQSS SISLQSFSDW  1080
RTFTSLRELR IEGECERLES WVSRLQFPLS LEKLVLKGFP NLEILPSLDN LNSLRELGIV  1140
NWKKLKYLPM GLQQLPPLKI LEVGGFWEEL DCFPDFQVGS LMHLTGLELT GWPKLKSLPQ  1200
QIQHLTSLTS LWVRNFDGVE TLPEWLGSLT SLTYLRIGGC KNLMNLPSVQ AMQRLTKLRT  1260
LNIYECHPLL KQRCRDSGTD WPKISHIPYI EMASIFLLAC CGVSRDAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	95	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-47	B3 family protein