PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020193.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 889aa MW: 98199.6 Da PI: 7.5231

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020193.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H PCP020193.1 76 KCDKCPREFCSSINYRRHIRVH 97 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence
MSIAKPTTSN SLYAMKSEEE SDSLDTIIRQ AAKEPSISFS RAGDSPVPWI QLLHALDQQE 60 LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK 120 LSPEEAKEAV SFKNVTLEEV PGSSIIKALT TLIRKQGFSL SPTLFEGRFS LLDIVQARPS 180 RFPISSQELF SILDDASEMT FLSGTAISMQ RYIFDGEAGK IGLESKNLVA CTSFLVEQKL 240 LKAWHADKDT EALRLQKLLV EEEEAAQRRQ TELLERKRQK KLRQKEQKEK DQGNGEKIDV 300 KENIDETLDA VPLVETSSPS ATFDSDTASS DMLDHACLSL ESFQLSNTDV SADPESQTRV 360 SFGHVDSTSG PNVERRVVQG NGSRRAAARW QLSPKSQRGV PNGFHGGHSS QTSKHSSTQH 420 HGNHRDARAA SSGNRVWSRK PKPEYDGRSL KAGVQKVASE PDQIKNREVL IGSIPVNLGN 480 CCQESNNQAG VHDECLSEKG QVPKHNSQDK THKPDLVQSG TNRSTVKLWR PVSRNGTKGP 540 MPIQNGSKES DINVVAEKGN SQNLHSENCE RSCVVDGHDV GNGNDSTHPD ETGRLGFSSH 600 AAKDFLAQRW KDAIAADHVE LVLFQDSEPP RCPENQDDRE VAATHPSRFK RSILGNAENR 660 LANGDAFDLP TAGAAKVRRR TKHDKGVKIK YIPKHSAVAY STPSSSWWSS LLAASGLVSP 720 LDFAFVLFSV VYIFFLGKFA FPPQSDDPSK DPPVFNAEGI MVKTGPAFGA VLGLALPIAY 780 IFHGVLEGDQ EGIEAAVPHV FLLASQAFMD GVAYSDRFST PIRVFMPVFF SAKRIFTLMD 840 WVGNEFSKVC VGGGCDAAAE RRVLLGRGLA VANLVFWSLD FFVKIIFGF

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence

MSIAKPTTSN SLYAMKSEEE SDSLDTIIRQ AAKEPSISFS RAGDSPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK  120
LSPEEAKEAV SFKNVTLEEV PGSSIIKALT TLIRKQGFSL SPTLFEGRFS LLDIVQARPS  180
RFPISSQELF SILDDASEMT FLSGTAISMQ RYIFDGEAGK IGLESKNLVA CTSFLVEQKL  240
LKAWHADKDT EALRLQKLLV EEEEAAQRRQ TELLERKRQK KLRQKEQKEK DQGNGEKIDV  300
KENIDETLDA VPLVETSSPS ATFDSDTASS DMLDHACLSL ESFQLSNTDV SADPESQTRV  360
SFGHVDSTSG PNVERRVVQG NGSRRAAARW QLSPKSQRGV PNGFHGGHSS QTSKHSSTQH  420
HGNHRDARAA SSGNRVWSRK PKPEYDGRSL KAGVQKVASE PDQIKNREVL IGSIPVNLGN  480
CCQESNNQAG VHDECLSEKG QVPKHNSQDK THKPDLVQSG TNRSTVKLWR PVSRNGTKGP  540
MPIQNGSKES DINVVAEKGN SQNLHSENCE RSCVVDGHDV GNGNDSTHPD ETGRLGFSSH  600
AAKDFLAQRW KDAIAADHVE LVLFQDSEPP RCPENQDDRE VAATHPSRFK RSILGNAENR  660
LANGDAFDLP TAGAAKVRRR TKHDKGVKIK YIPKHSAVAY STPSSSWWSS LLAASGLVSP  720
LDFAFVLFSV VYIFFLGKFA FPPQSDDPSK DPPVFNAEGI MVKTGPAFGA VLGLALPIAY  780
IFHGVLEGDQ EGIEAAVPHV FLLASQAFMD GVAYSDRFST PIRVFMPVFF SAKRIFTLMD  840
WVGNEFSKVC VGGGCDAAAE RRVLLGRGLA VANLVFWSLD FFVKIIFGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-114	C2H2 family protein