PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020179.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 583aa    MW: 65001.9 Da    PI: 6.2116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020179.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.71.9e-1302135821373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+elL++cA+ +s++d+   ++l+++ +  +s  g+p+qRl ay++e+L ar   s+ ++y+al+++e +   s + l+++++++e++P+lkf++++a
  PCP020179.1 213 LKELLIACARTLSNNDMDSFEKLIEKARGAVSIGGEPIQRLGAYLVEGLVARKEASGANIYHALRCREPE---SNDLLSYMQILYEICPYLKFGYMAA 307
                  5799*****************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rL+ + +++++p+ef+  v     d++ ++L
  PCP020179.1 308 NGAIAEACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKhaRGDGLEAVGRRLKAISDKFNIPVEFHG-VPVFAPDVTRDML 404
                  ***************************************************99988999*************************.688899******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+ +++rd +L++v+sl+Pkv ++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri+vE+++l+r
  PCP020179.1 405 DVRPGEALAVNFPLQLHHTPDESVDENNPRDGLLRTVRSLNPKVTTLVEQESNTNTTPFFNRFVETLEYYLAMFESIDVTLPRNSKERINVEQHCLAR 502
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ + +llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  PCP020179.1 503 DIVNVIACEGKERVERHELFGKWKSRLTMAGFQQYPLSSYVNSVIGSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582
                  *************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MDQHFRFRAT GAGLSYTAPL PTVQSLPKRL LGSLKFDIKN SSNTPFSTHF DSDTLTTLSD  60
SQEQHSSPEN LSGATPSGTS SFETNSYVNR LSLSPSVDCS RDSLQVYSGR TSSLKDANSS  120
QNIKQTLQEL ESALMGPDDE EEEVTTANTS SGESSRRQTQ RSMSWIEEHQ GSNPVQRQTS  180
FVSRQRQLGE AQFEKRHKVI DEASLKGLPA SNLKELLIAC ARTLSNNDMD SFEKLIEKAR  240
GAVSIGGEPI QRLGAYLVEG LVARKEASGA NIYHALRCRE PESNDLLSYM QILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWVTLLQA LAARPSGAPH VRITGIDDPV  360
SKHARGDGLE AVGRRLKAIS DKFNIPVEFH GVPVFAPDVT RDMLDVRPGE ALAVNFPLQL  420
HHTPDESVDE NNPRDGLLRT VRSLNPKVTT LVEQESNTNT TPFFNRFVET LEYYLAMFES  480
IDVTLPRNSK ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT MAGFQQYPLS  540
SYVNSVIGSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-175GRAS family protein