PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020065.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 341aa    MW: 37794.8 Da    PI: 8.2803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020065.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP86.46.6e-27571842105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa........ 70 
                   g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   ++ i++l+ +                     +   +        
  PCP020065.1  57 FGGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLRLSQPSKVIDWLLGVTEQDIDKLPPLqvphgfghqfhqpmlyphqasN---Sliapffdv 151
                  689*************************************************************6666666655555555443320...122222222 PP

          TCP  71 .sec....eaesssssasnsssgkaaksaa.kskksqksaa 105
                   s +    +++++++ ++       ak +  k++++q++ +
  PCP020065.1 152 nS-TfmeaDQVDEQVRDQ-------AKGKSiKTNDEQDDRN 184
                  11.112112222222222.......2222212222222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MITNSRDKGF QAKQEGHNNN DGNNNSSFNK ASSSSTTTSR QWSVFRNPRI VRVSRAFGGK  60
DRHSKVSTVR GLRDRRIRLS VPTAIQLYDL QDRLRLSQPS KVIDWLLGVT EQDIDKLPPL  120
QVPHGFGHQF HQPMLYPHQA SNSLIAPFFD VNSTFMEADQ VDEQVRDQAK GKSIKTNDEQ  180
DDRNRHDHEG NVSGQLLAQK LFPIGNHPSS IPGLLNNAMA FNYYHNYLEP STLSLAQFGS  240
HGFPQGPQTD QHRSHMMSTN ALSFSTPMAS GSQLCFCPPT ATPTLFGSYP PYMTNPIVEG  300
TSTANDQLRQ ASHFQFLSSS VSGNADDGAD GGGSGETYRR I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-47TCP family protein