PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019810.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 523aa MW: 57798 Da PI: 8.6053

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019810.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.2e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP019810.1 78 FVCEICNKGFQREQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	12.5	0.00044	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +++ PCP019810.1 154 WKCEKCSKRYAVQSDWKAHSKVC 176 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MSNLTCASGD LSASNSSIRN ESSSAGTVYP QHSSSSTQIQ QQQAPPPPKK KRNLPGNPDP 60 DAEVIALSPK SLMATNRFVC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT GKEVRKKVYL 120 CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKVCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQENN TSTAAARSAM PASINPLLSS LPQIHSHGLQ 240 ALSAVKREQD QHQHQQHQHP QHLPPWLSCL PEGGEAASLP TMNLSASPLF STSSFQQYYS 300 FGQNPNPSSS STTLLPDNFQ VQQTPAPPHM SATALLQKAS EMGATISKPS PSPYFLKPPT 360 HQSHQAHMSN ETSRDQAILL DDGFGNNENK SSLLHDMMMM SGSQGFHHDR HQVSSSSFGD 420 HPQQQQAFNG IMVDGNFVEI NNNNPPQNYN KPRSTDNNNE GLTRDFLGLR APFSSAASHG 480 GHGDFFSINM AGLDHHHVST SSSPATYNNN CPQNDQNQTS WQG

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MSNLTCASGD LSASNSSIRN ESSSAGTVYP QHSSSSTQIQ QQQAPPPPKK KRNLPGNPDP  60
DAEVIALSPK SLMATNRFVC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT GKEVRKKVYL  120
CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKVCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQENN TSTAAARSAM PASINPLLSS LPQIHSHGLQ  240
ALSAVKREQD QHQHQQHQHP QHLPPWLSCL PEGGEAASLP TMNLSASPLF STSSFQQYYS  300
FGQNPNPSSS STTLLPDNFQ VQQTPAPPHM SATALLQKAS EMGATISKPS PSPYFLKPPT  360
HQSHQAHMSN ETSRDQAILL DDGFGNNENK SSLLHDMMMM SGSQGFHHDR HQVSSSSFGD  420
HPQQQQAFNG IMVDGNFVEI NNNNPPQNYN KPRSTDNNNE GLTRDFLGLR APFSSAASHG  480
GHGDFFSINM AGLDHHHVST SSSPATYNNN CPQNDQNQTS WQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	117	KLKQRTGKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-109	C2H2 family protein