PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019633.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 824aa    MW: 88166 Da    PI: 6.3953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019633.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.6e-1284528112374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lLl+cAeavs++++ +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp s+ +++++++ ++a+++f+ +sP++kfsh+taN
  PCP019633.1 452 LTLLLKCAEAVSADNFDEATKILLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPRSSVPTTHTQKMVSAFQVFNGISPFIKFSHFTAN 549
                  579*****************************************************************999*************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + v++++++l++e+L+++
  PCP019633.1 550 QAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP-VVEKVANLDPERLNIS 642
                  **************************************************....***************************.799************* PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++Ea+aV++    h+l+d ++s +s    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei+
  PCP019633.1 643 KREAVAVHWLQ--HSLYDVTGSDSS----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIR 733
                  **********9..999999999888....**********************.899******************************************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  nv+a  g +r  + + +++Wre++++ GF+ ++l  +aa+qa+lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  PCP019633.1 734 NVLAVGGPSRSGEVK-FHNWREKFQQTGFRGISLAGNAANQASLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 811
                  *********888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    
MAACALLGDN GGDRISGNGS SNNNNSDSLG GGGGNPSYPM NNSTTNSNSS SVEQQPPKMV  60
RKRMASEIEV QTTLTSRTAG SDYFRLSRRG IINNSPPVQP VSQNPNASKV NSSMFYPNHS  120
TMLLPVPSST NLAALTSPGG ALLSPTSPSP SPSSAAAAGT WGPIDPLSFH RPPPVQPTTT  180
TQTTTTPAVC GFSGLPLFPP EKTTPLNTSI TATTPSSVSM EDGSSAATAW IDGIIKDLVH  240
SSTNVSIPQL IHNVREIIFP CNPSLAALLE YRLRSISEPL PPPPLPLPVP SFNPTPIPDM  300
RRRQQGGPGP GALKLNLDSG AIHDVAIFNP STVENNDLYL QSWSGGAGGG GVGLSLPQPN  360
PTAAPITCNQ TNPHHQSPSF NQAIHQTQDK QLENSSSSSP AAESTTPTAA PAPTTTAATA  420
PPEPTTSAVS LLREKKEEIR QQKRDEEGLH LLTLLLKCAE AVSADNFDEA TKILLEISEL  480
STPFGTSAQR VAAYFSEAMS ARLVSSCLGI YASLPRSSVP TTHTQKMVSA FQVFNGISPF  540
IKFSHFTANQ AIQEAFERED RVHIVDLDIM QGLQWPGLFH ILASRPGGPP YVRLTGLGTS  600
MEALEATGKR LSDFADKLGL PFEFFPVVEK VANLDPERLN ISKREAVAVH WLQHSLYDVT  660
GSDSSTLWLL QRLAPKVVTV VEQDLSHAGS FLGRFVEAIH YYSALFDSLG ASYGEESEER  720
HVVEQQLLSR EIRNVLAVGG PSRSGEVKFH NWREKFQQTG FRGISLAGNA ANQASLLLGM  780
FPSDGYTLVE DNGTLKLGWK DLCLLTASAW RPPFHAAANP NLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein