PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019610.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 507aa    MW: 56810.5 Da    PI: 4.9936
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019610.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.42.3e-1061265063374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  elLle A+a+++++ + +q+l++ l+el sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + +  f+evsP+ +f+h+++N 
  PCP019610.1 126 ELLLETARAIADKNSSHVQQLMWMLNELGSPYGDTDQKLASYFLQALFSRMTDSGDSCYRTLISASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNG 223
                  69***********************************************************96655554444444344445***************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak.rledle 190
                  aI+ea++ge ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v++++++        ++ ++e+g r++kfA+ +gvpf+fn+++++ +l++l+
  PCP019610.1 224 AIMEAFDGEPKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVANRANdgsggaaAQKVMKEIGARMEKFARLMGVPFKFNAVHHSgDLSELN 321
                  ***********************************************9988778999*99999*************************8888****** PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerik 284
                  l+e++++ +Eala+n+v  lh++     s+ ++rd ++++++sl+P+++++ve+ead++ +    +F+++f e+l+++ + f++l+++++r+s+er  
  PCP019610.1 322 LSEFDIRDDEALAINCVGTLHSVQ----SVGNRRDYLVSAFRSLRPRIITLVEEEADLDVGvdgiDFVHGFEECLRWFRVYFEALDESFSRTSNERLI 415
                  ***********************7....888899*********************99865556669******************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                  +Er+  gr++v++vac+ +e++er+et+++W++r++ aGF+p+ +s+++ +++++llr++k +g+ +    ++ + ++l Wkd+p+v++SaWr
  PCP019610.1 416 LERA-AGRAVVDLVACSPSESVERRETASRWSRRMHGAGFSPAMFSDEVCDDVRALLRRYK-EGWAMTqctDSVAGIFLSWKDQPVVWASAWR 506
                  ****.********************************************************.6655542325566777**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MDTLFRLVNL QSDPHQSFTI STTARTSTPT TTTTTSSSSR SSFLSNRPHP NYPHQDDDVG  60
EECFNFFMDE EDFSSSSSKH YFPSNHPTPP TPNPLPTITT TPTPADFSFS PSLVNFELSN  120
DKWAPELLLE TARAIADKNS SHVQQLMWML NELGSPYGDT DQKLASYFLQ ALFSRMTDSG  180
DSCYRTLISA SEKTCSFEST RKTVLKFQEV SPWTTFGHVA CNGAIMEAFD GEPKLHIIDI  240
SNTYCTQWPT LLEALATRTD ETPHLRLTTV VANRANDGSG GAAAQKVMKE IGARMEKFAR  300
LMGVPFKFNA VHHSGDLSEL NLSEFDIRDD EALAINCVGT LHSVQSVGNR RDYLVSAFRS  360
LRPRIITLVE EEADLDVGVD GIDFVHGFEE CLRWFRVYFE ALDESFSRTS NERLILERAA  420
GRAVVDLVAC SPSESVERRE TASRWSRRMH GAGFSPAMFS DEVCDDVRAL LRRYKEGWAM  480
TQCTDSVAGI FLSWKDQPVV WASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein