PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019574.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 465aa MW: 51095.4 Da PI: 9.1579

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019574.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP019574.1 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	11.7	0.00082	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PCP019574.1 155 WKCDKCSKIYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MFPISMSNST SLSEEGNSVS SDFAAALNPL LLSTNISPHQ YDQPPNKIKK KRSLPGNPDP 60 DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKDQIRKRAY 120 VCPEPSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQFAT AAITTATITP QISLFPFPTH 240 GQQHFTNPNP PLPPFTTISL TQWDPPQPHQ NPNPSPNPTQ NSPLHHLIKP ESHHHFPPPP 300 QQPYKGLIIS PFQNLHVSTQ PNSNPTTSSA HLSATALLQK AATVGAAVAS GAQQGQSAGL 360 TVGEFGTASH MISTEYLGGF ASGELATWRK TDSLTRDFLG LNGDGTGHDN NNVRGVRVKD 420 MLTYAGGVGF HQPPYERLRG HDSLLKPQGF GFAETTTASE TWGDC

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MFPISMSNST SLSEEGNSVS SDFAAALNPL LLSTNISPHQ YDQPPNKIKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN SKDQIRKRAY  120
VCPEPSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKIYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQFAT AAITTATITP QISLFPFPTH  240
GQQHFTNPNP PLPPFTTISL TQWDPPQPHQ NPNPSPNPTQ NSPLHHLIKP ESHHHFPPPP  300
QQPYKGLIIS PFQNLHVSTQ PNSNPTTSSA HLSATALLQK AATVGAAVAS GAQQGQSAGL  360
TVGEFGTASH MISTEYLGGF ASGELATWRK TDSLTRDFLG LNGDGTGHDN NNVRGVRVKD  420
MLTYAGGVGF HQPPYERLRG HDSLLKPQGF GFAETTTASE TWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-111	C2H2 family protein