PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019504.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 792aa    MW: 87852.5 Da    PI: 5.5069
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019504.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2806.9e-864297261297
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avs++d++ +++lL++++++asp+gd  qRla++f+++L+ar+a++++++ k  ++ ++ +++ +++l+++++   ++P+ +++ l  
  PCP019504.1 429 LRNLLILCAQAVSTNDFRTTSELLKQVRQHASPNGDGCQRLAHFFANGLEARMAGTGTGTQKFYTSLAK-RSSAVDVLKSYQVHLSACPFKRMCMLFK 525
                  6899***************************************************99999876655555.588999********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R +gpp+lRiTg++ p++g   +e +eetg+rL +++e++gvpfe+n+++++++e+++l +L
  PCP019504.1 526 NKMILKMAEKATTLHIVDFGILYGFQWPILIQHLSKRHGGPPKLRITGIEVPQPGfrPAEWIEETGRRLGRYCERFGVPFEYNAVASQNWESIQLADL 623
                  ******************************************************9*99**************************9999********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+laVn++l+ ++llde+v+ + +rd+vL+l+++++P+++v++  + ++n++ F++rf eal +ys+l+d+++ ++pr++eer   E e+ gr
  PCP019504.1 624 KTERNEVLAVNCMLRFKNLLDETVEENCPRDAVLNLIRKMKPDIFVHSIINGSYNAPFFVTRFREALFHYSSLYDAFDINIPRDNEERLGFESEFYGR 721
                  ************************************************************************************************** PP

         GRAS 293 eivnv 297
                  e++nv
  PCP019504.1 722 EAMNV 726
                  **997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    
MDHPTVNGSP DYLNGFSIDD LAFSPDLTQF SNLTNEYQFN QFSPDLNFMD NQFSLPPDFE  60
QGNIVPEVSL TTSGESFVPS KSLSPPDGGS LSLPTTVSVG GADSSSDDSD FSEAIFKYAN  120
QILLEENIEK KPCMFFDPLG LRVTEKSFYD VLGQQYPFSP NQQPLHINPN VESPDGNISG  180
NCSDCSGSNR SSSPGTSNSI DPQWVGDSGE QKPSFPQTSL PNDSPFQFNS HSSSQLSVPL  240
ENRMTSVGDG QHVGDMLQGS SAEEFVAQNI FTDSDSILQF QRGLEEASKF LPKSTQLLVD  300
LESNTVSPEV KANVPIVTVK KEKSERKKSP NGSKGRKNRE REDVDLEEGR SSKQSAVYKE  360
KTEESELSEM FDKVLLSTGG NNESQCDSVA FKNEASKTLQ PSGQPQGSNG NGGKARGKKQ  420
GKKKETVDLR NLLILCAQAV STNDFRTTSE LLKQVRQHAS PNGDGCQRLA HFFANGLEAR  480
MAGTGTGTQK FYTSLAKRSS AVDVLKSYQV HLSACPFKRM CMLFKNKMIL KMAEKATTLH  540
IVDFGILYGF QWPILIQHLS KRHGGPPKLR ITGIEVPQPG FRPAEWIEET GRRLGRYCER  600
FGVPFEYNAV ASQNWESIQL ADLKTERNEV LAVNCMLRFK NLLDETVEEN CPRDAVLNLI  660
RKMKPDIFVH SIINGSYNAP FFVTRFREAL FHYSSLYDAF DINIPRDNEE RLGFESEFYG  720
REAMNVGFGR TRVFQFVLSE PLFCAVAAYG IRQSSGTNFA GTVSADPVVF LTREKCRMPC  780
VVRVADLRIS SP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175GRAS family protein