PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019500.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 645aa    MW: 73493.7 Da    PI: 6.0339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019500.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.15.2e-1092766433374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L++cA+av+s d ++a++lL++++ ++sp+g+ +qRla+y++ +L+ rl + v   y++lp s+ s    ++ l+a++++  ++P+lk+s++ aN+
  PCP019500.1 276 SMLTQCAQAVASYDRRNANELLQQIRLNSSPYGEGTQRLAHYLADGLELRLGS-VVPSYNSLPNSQMS---AADLLKAYQTYIRACPFLKMSNVYANK 369
                  689*************************************************9.55556677777776...9************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +Il+ +e+++++HiiDf++ +G QWp+L++ L++R +gpp+lRiTgv+ p++g   +e++e+tg+rL++++++++v+fe+++ +ak++e++++e++++
  PCP019500.1 370 TILKLAEKATKLHIIDFGVLYGYQWPCLIKGLSKRHGGPPMLRITGVEFPQPGfrPSERVEQTGRRLENYCKRFNVQFEYTA-IAKNWETIRYEDIKI 466
                  ****************************************************9*****************************.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +++E ++Vn+ ++l++l+de+v+    rd+vLkl+++++P+++++   + ++n++ F +rf eal ++s+lfd+++++lpre+++r  +Ere+ gr++
  PCP019500.1 467 DRDELTVVNCLYRLKNLPDETVTDCP-RDTVLKLIREINPDIFIHGVVNGSYNAPFFDTRFKEALFHFSSLFDMFDETLPREDQHRLLYEREVYGRNA 563
                  ******************99998887.*********************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   nv+aceg++r+er et+++W+ r ++aGF+++p ++++ k +++++++ + + + v+e+  ++++gWk+r + ++S W+
  PCP019500.1 564 INVIACEGSRRVERPETYKQWQIRNKRAGFRQLPSDQEILKLVRSMVKRDYHKDFIVDEDGMWVLQGWKGRIVHAISYWK 643
                  *************************************************99888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    
MDTFLDELPS PMNKFVFEQA PIPAYSNPNL VHEFEANHDF TDPSFFLVNP DPVSDLSSSP  60
GVSSEVDSPD SGDTSNEILR YISQMLMEEE EYLENKPCML HECLALQAAE KSLHDVLVQE  120
QNPFSTGPLL DSVYRYVESP NQGSNHSSSG SVAAGNWVGS DWDWVQDVSK SSPAQIPNPL  180
VSSGDGEIAH LEHNSSFVMA PREPLGKDVS FNSENGSRSK KNRQREDEDS VDDGRSNKLS  240
AESEKLQLNG KSRGSKGKKT RKKKPDDNAG MVDLWSMLTQ CAQAVASYDR RNANELLQQI  300
RLNSSPYGEG TQRLAHYLAD GLELRLGSVV PSYNSLPNSQ MSAADLLKAY QTYIRACPFL  360
KMSNVYANKT ILKLAEKATK LHIIDFGVLY GYQWPCLIKG LSKRHGGPPM LRITGVEFPQ  420
PGFRPSERVE QTGRRLENYC KRFNVQFEYT AIAKNWETIR YEDIKIDRDE LTVVNCLYRL  480
KNLPDETVTD CPRDTVLKLI REINPDIFIH GVVNGSYNAP FFDTRFKEAL FHFSSLFDMF  540
DETLPREDQH RLLYEREVYG RNAINVIACE GSRRVERPET YKQWQIRNKR AGFRQLPSDQ  600
EILKLVRSMV KRDYHKDFIV DEDGMWVLQG WKGRIVHAIS YWKPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-167GRAS family protein