PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019460.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 476aa MW: 53741.5 Da PI: 6.9696

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019460.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.4	1.7e-40	185	351	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa..sec...eaess 78 + k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl q++p+ik+l ++ + s+a ++c + PCP019460.1 185 TNKRDRHSKINTARGPRDRRMRLSLEVARKFFGLQDVLEFDKASKTVEWLLIQSEPEIKKLSRDhhrkfnyknmvrcaktT-SPAtsESCeilS---G 278 679**************************************************************99999999999852.333333443332...2 PP TCP 79 sssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + +a +++ k +++++k ++q+++ +++ lak sr+karararertrekm+ ++k PCP019460.1 279 VDEAP-TNINisnggnddndkvrscgiKPSAKEKKIVHRQSRKRAFHPLAKASREKARARARERTREKMQRSKK 351 22222.1111334455666789999985555555666666666668*********************98865 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MFPSDNTDNV NELIPVSYPH VDQPFFHSRP FDHDITTVTP NFFTNSNPNP NSGQQRGGEE 60 NLHQQHHHPP LSLLCFPSPF EDDDVLLFQQ HHHQEPDHIE ISLHESQVPP YFMKEAAAAA 120 TATAAAAAAA AAATAADDNT GTVVGDDHQK TTTTSVNIKM VDWDSNKNGH HMDMDDQPQI 180 PRRRTNKRDR HSKINTARGP RDRRMRLSLE VARKFFGLQD VLEFDKASKT VEWLLIQSEP 240 EIKKLSRDHH RKFNYKNMVR CAKTTSPATS ESCEILSGVD EAPTNINISN GGNDDNDKVR 300 SCGIKPSAKE KKIVHRQSRK RAFHPLAKAS REKARARARE RTREKMQRSK KPSNDQAKLS 360 RLNSWNPFES GEESSAYNNN MNNTANDQPD SLVALRPYPD GVEEPLSSSL AGDIQDMVVD 420 HGATHDAMVV MGKWSPSSVF TPLQQNTGIS QEHQQFADFQ FFDKPWDVYN NTHKLF

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MFPSDNTDNV NELIPVSYPH VDQPFFHSRP FDHDITTVTP NFFTNSNPNP NSGQQRGGEE  60
NLHQQHHHPP LSLLCFPSPF EDDDVLLFQQ HHHQEPDHIE ISLHESQVPP YFMKEAAAAA  120
TATAAAAAAA AAATAADDNT GTVVGDDHQK TTTTSVNIKM VDWDSNKNGH HMDMDDQPQI  180
PRRRTNKRDR HSKINTARGP RDRRMRLSLE VARKFFGLQD VLEFDKASKT VEWLLIQSEP  240
EIKKLSRDHH RKFNYKNMVR CAKTTSPATS ESCEILSGVD EAPTNINISN GGNDDNDKVR  300
SCGIKPSAKE KKIVHRQSRK RAFHPLAKAS REKARARARE RTREKMQRSK KPSNDQAKLS  360
RLNSWNPFES GEESSAYNNN MNNTANDQPD SLVALRPYPD GVEEPLSSSL AGDIQDMVVD  420
HGATHDAMVV MGKWSPSSVF TPLQQNTGIS QEHQQFADFQ FFDKPWDVYN NTHKLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	4e-24	TCP family protein