PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019310.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

RAV

Protein Properties

Length: 343aa MW: 39488.5 Da PI: 8.991

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019310.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.9	3.4e-10	38	85	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + r++lg+f +++eAa a++ a+ kl+g PCP019310.1 38 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 85 799997566.8****999......44***********************97 PP
2	B3	83.1	2.7e-26	165	256	1	83
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+p + a+++ ++++ +s +l+++d+ rsW+++++y+k+s+++v+t+GW++Fvk ++Lk++D+++F PCP019310.1 165 FQKELTPSDVGKLNRLVIPVTNAKRCfpsvseaisQKVESSSSQLVFYDKMMRSWTFRYCYWKSSRSFVFTRGWSRFVKTHHLKAKDILTFF 256 99*****************************9988899999*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSRTISNVGV KRNVEEVCDP NLAANDSSDG ASRHVSKRFK GVVEQPNGHW GAQIYANHER 60 VWLGTFSSEN EAAMAYDSAA IKLRGWECHR NFPWTKVTFE EPHFQNQYSK EAVLRMIKDG 120 SYQAEFLEYQ KSCAASKSLR SDIQFGSLVR VHSNGNAKML NRLLFQKELT PSDVGKLNRL 180 VIPVTNAKRC FPSVSEAISQ KVESSSSQLV FYDKMMRSWT FRYCYWKSSR SFVFTRGWSR 240 FVKTHHLKAK DILTFFQRQY KQLGDNGNKE PQTFYMVKVN WDGAESEDDN INCLVENEAT 300 NYQYNKCKLE SVSQNINEAD GILADQKKRF RLFGVEICNE VAH

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSRTISNVGV KRNVEEVCDP NLAANDSSDG ASRHVSKRFK GVVEQPNGHW GAQIYANHER  60
VWLGTFSSEN EAAMAYDSAA IKLRGWECHR NFPWTKVTFE EPHFQNQYSK EAVLRMIKDG  120
SYQAEFLEYQ KSCAASKSLR SDIQFGSLVR VHSNGNAKML NRLLFQKELT PSDVGKLNRL  180
VIPVTNAKRC FPSVSEAISQ KVESSSSQLV FYDKMMRSWT FRYCYWKSSR SFVFTRGWSR  240
FVKTHHLKAK DILTFFQRQY KQLGDNGNKE PQTFYMVKVN WDGAESEDDN INCLVENEAT  300
NYQYNKCKLE SVSQNINEAD GILADQKKRF RLFGVEICNE VAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	3e-79	RAV family protein