PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019281.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 684aa MW: 77360 Da PI: 8.8735

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019281.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.8	6.4e-09	37	105	8	76
trihelix 8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 l L++ + +e + ++ + ++W+ +++++ + g++r+ q + kw+ l ++yk ik++e k ++ +s PCP019281.1 37 LILVNEVAAVEADCLKALSSFQKWKIIAQNCFALGVSRTLDQYRRKWDALFGEYKGIKQWEAKCRASDS 105 5566666677777777778889****************************************9644433 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MKPEQTPSQL DRSHRSSGNR RSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW 60 KIIAQNCFAL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP 120 EKFDQELFSG IDKLVRVRGN QSDTDPDSDP EDEAEAEPKE ELDSKPESKR RKRRSIPQKS 180 CPKENSLRSC KREKPHETHA QEKPQETHAE EKPVGSGLKA IPTKSLAEEQ PQKSWVKKKL 240 TNSQRKEEAI SIEEQEKIAA MKLHESAELI RAIVTETPDH EAAGVKSTGD LQTDFVRCQG 300 DRVIACLGDI VKTLDQLRHL VQEFLVPILT SLSLKLPSGD PISFNKLVQL PESSLATIGF 360 ITLSGFFRKY GLRQLLFLDG LTEDSGFVHR GYTRELDKAF KYLACILLPS FFIELAHKII 420 FFSTVHISLP RISSSVPVNS IMFVLVLASW VYRTGVFLLV CVMFRLTCEL QILRFKRLCK 480 LFEGREYESS IIFQEHVRIR KQLKVTSHRY RFFIIGCMFI ITVSQFGALL LVLASKTEKT 540 FLNSGDLVVC SAVELSGLFC CLMEAARITH RAQGVVAIAT RWHMLLTCPS AGSDQQWKSR 600 QISSKANGRR GESDSEHSSD ISTSVPPQEP SSFQTRQALV AYLSHNNGGI TLYGFALDRG 660 LLHTLFAFEF SLVLWVLSKV VVLS

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MKPEQTPSQL DRSHRSSGNR RSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW  60
KIIAQNCFAL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP  120
EKFDQELFSG IDKLVRVRGN QSDTDPDSDP EDEAEAEPKE ELDSKPESKR RKRRSIPQKS  180
CPKENSLRSC KREKPHETHA QEKPQETHAE EKPVGSGLKA IPTKSLAEEQ PQKSWVKKKL  240
TNSQRKEEAI SIEEQEKIAA MKLHESAELI RAIVTETPDH EAAGVKSTGD LQTDFVRCQG  300
DRVIACLGDI VKTLDQLRHL VQEFLVPILT SLSLKLPSGD PISFNKLVQL PESSLATIGF  360
ITLSGFFRKY GLRQLLFLDG LTEDSGFVHR GYTRELDKAF KYLACILLPS FFIELAHKII  420
FFSTVHISLP RISSSVPVNS IMFVLVLASW VYRTGVFLLV CVMFRLTCEL QILRFKRLCK  480
LFEGREYESS IIFQEHVRIR KQLKVTSHRY RFFIIGCMFI ITVSQFGALL LVLASKTEKT  540
FLNSGDLVVC SAVELSGLFC CLMEAARITH RAQGVVAIAT RWHMLLTCPS AGSDQQWKSR  600
QISSKANGRR GESDSEHSSD ISTSVPPQEP SSFQTRQALV AYLSHNNGGI TLYGFALDRG  660
LLHTLFAFEF SLVLWVLSKV VVLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-48	Trihelix family protein