PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP018825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23893.3 Da PI: 9.7686 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.8e-17 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+n+ r+ tf kR++g+lKK +EL +LCd++++ ii++++++ PCP018825.1 11 IQNDQTRKLTFKKRKKGLLKKMSELTILCDVQACAIIYGKHDT 53 99*************************************9765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MTREKVKLAY IQNDQTRKLT FKKRKKGLLK KMSELTILCD VQACAIIYGK HDTQAEVWPS 60 PAGVQRTYMK FKTMPSMEQT KKQLNMETFL RQQIEKAKDQ LRKQKKENHE KEMSIMMSKC 120 LTGRSLQGFN MEDLNDLGWV IDHKVEEINR KMKKVNDELA QNEQSKPCSK NIIATSDQRQ 180 NDEHAASSGS THGDDDPTRP SATSADGGA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-43 | M-type_MADS family protein |