PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP018351.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 18793.6 Da PI: 10.3766 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.1 | 8.3e-22 | 3 | 46 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +e++s rqvtfskRr g++KKA+EL +LC+ae+av++fs+ gk PCP018351.1 3 VVEDSSSRQVTFSKRRSGVFKKANELAILCGAEIAVLVFSPGGK 46 689**************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
MKVVEDSSSR QVTFSKRRSG VFKKANELAI LCGAEIAVLV FSPGGKPFSF GHPNVESIAD 60 RFLNEECPKS KFRVSKNDEK AGRLNQQLED MDSQLEAEKK RGLMLDKAVL KARGLPLKSK 120 PPSFREQSRA DLRKMKASLE ALRETVKERA TEVEASSSLL LLANDRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-33 | M-type_MADS family protein |