PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018235.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35095.4 Da    PI: 6.81
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018235.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141252343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n++ r+  f kR++ + KKA ELS LCd++va+i++  +
  PCP018235.1 12 IPNETARKMAFRKRKKSVYKKADELSKLCDIDVALIVYEAD 52
                 889**********************************9766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MVTPTRRSLE LIPNETARKM AFRKRKKSVY KKADELSKLC DIDVALIVYE ADQRKGIRPV  60
QPETWPQDPV EFNRILSRYK ASKDAAAPGF LKRSFSLSDF YGAKMKKDDD GGDGDHSDGG  120
DDGDGGDDGD DDDHVDPKLQ KPGNKHISEN KYPTWDARID LFSEDELIKF IASLEAKIQA  180
STLEIDSMER YYAVKQNQNL SRTHSSSSET PRLLNPAYFD VQMPPSQDPV NPFIHDALGQ  240
KVTRELAKWG GFNKNSVNST TTSTTTSVME LKNPMHTIST TSTSAMESKP PLPVKRPMLP  300
SAWILNSELQ KKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-15M-type_MADS family protein