PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018213.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 917aa MW: 103164 Da PI: 6.4571

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018213.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.6e-17	513	560	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll++ v+++G g+W+++ar g++R +k+c++rw +yl PCP018213.1 513 KGPWTAEEDGLLIEHVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 560 79********************************************97 PP
2	Myb_DNA-binding	49.6	9.2e-16	566	610	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ PCP018213.1 566 RGHITPHEESIILDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 610 6778****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence
MSLQDSHAEM IKAYVLRKCL ESRYNAWVVD GNILPVSSDL FVESDPSYDF YIGKSSELFF 60 ASRSFAQKVD GDDFISKFAT MASSLLVKRQ SISFGFIMTK LLEQKGVKVK SLNETSFGLK 120 IDYSNVNQSL GDGKQMVFWS SDTASDLVQK RLQELGMIFI CQVFYDLDSR DPRISALPVP 180 SSKLGPSMKN LPALHGGNNF ILTDPTHILN TTTVNTTALT DPTMNPPVSS SSDMPQKSLA 240 SSNPPLQGET LHDEQVWTMA AATTDLPLPL LTEPAVAALL AQPSEAASLP TELAADTAVQ 300 CSPTATVLPL ADLETSIDTT PPSSQNIAPP DDHTPENIPK IRSTIPIDQF DVKNAFLHGN 360 LKEEVYMDIP PGYASVSQPG LVCDDKEEIS RLKDYLATKF EMKDLAETGM LDCKSADTPI 420 VQNHHLAVHP DQVPTNKDRY QSPHQVEGYT DADWAGNITD RRSTSGYFTF MGGNLVTWQS 480 KKQKVVALSS AEAEYRGGHH RGWGMIEDEA WRKGPWTAEE DGLLIEHVRL HGEGRWNSVA 540 RLAGLKRNGK SCRLRWVNYL RPELKRGHIT PHEESIILDL HARWGNRWST IARSLPGRTD 600 NEIKNYWRTH FKKKAKAPSD ASERAKTRLL RRHKPHNQQQ QQQNLQVDQE LKRIMSLLDE 660 NETKLPLYWP HAADHHQEQG FFYSMLDGNI VNVSMPEAAS SNEVNFLWDG IVWYANGTGQ 720 DRTERNGAGA KMPLDGNKEE EEGDGELNQQ LITKRDCKQK SDGGTAIMAA EALVQDRHHN 780 DVLAQPDYGA STASGLSFLR FFSLRTFRLS PQFSFMLIFE AALRYVRESE EIRFAMRPLE 840 LIKRVKEIQQ EAYEKPETAK EKDTRQTVAV DLSKRLKDLH YVNDATSFKA LEEWRKRKME 900 RARLRQLENN GTLATQA

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence

MSLQDSHAEM IKAYVLRKCL ESRYNAWVVD GNILPVSSDL FVESDPSYDF YIGKSSELFF  60
ASRSFAQKVD GDDFISKFAT MASSLLVKRQ SISFGFIMTK LLEQKGVKVK SLNETSFGLK  120
IDYSNVNQSL GDGKQMVFWS SDTASDLVQK RLQELGMIFI CQVFYDLDSR DPRISALPVP  180
SSKLGPSMKN LPALHGGNNF ILTDPTHILN TTTVNTTALT DPTMNPPVSS SSDMPQKSLA  240
SSNPPLQGET LHDEQVWTMA AATTDLPLPL LTEPAVAALL AQPSEAASLP TELAADTAVQ  300
CSPTATVLPL ADLETSIDTT PPSSQNIAPP DDHTPENIPK IRSTIPIDQF DVKNAFLHGN  360
LKEEVYMDIP PGYASVSQPG LVCDDKEEIS RLKDYLATKF EMKDLAETGM LDCKSADTPI  420
VQNHHLAVHP DQVPTNKDRY QSPHQVEGYT DADWAGNITD RRSTSGYFTF MGGNLVTWQS  480
KKQKVVALSS AEAEYRGGHH RGWGMIEDEA WRKGPWTAEE DGLLIEHVRL HGEGRWNSVA  540
RLAGLKRNGK SCRLRWVNYL RPELKRGHIT PHEESIILDL HARWGNRWST IARSLPGRTD  600
NEIKNYWRTH FKKKAKAPSD ASERAKTRLL RRHKPHNQQQ QQQNLQVDQE LKRIMSLLDE  660
NETKLPLYWP HAADHHQEQG FFYSMLDGNI VNVSMPEAAS SNEVNFLWDG IVWYANGTGQ  720
DRTERNGAGA KMPLDGNKEE EEGDGELNQQ LITKRDCKQK SDGGTAIMAA EALVQDRHHN  780
DVLAQPDYGA STASGLSFLR FFSLRTFRLS PQFSFMLIFE AALRYVRESE EIRFAMRPLE  840
LIKRVKEIQQ EAYEKPETAK EKDTRQTVAV DLSKRLKDLH YVNDATSFKA LEEWRKRKME  900
RARLRQLENN GTLATQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-73	MYB family protein